1158 lines
115 KiB
Plaintext
1158 lines
115 KiB
Plaintext
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"source": [
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"# 🌍 Decision Tree Land Classification - Planetary Computer\n",
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"\n",
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"## 📌 Notebook này chạy trên:\n",
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"- ✅ **Server ODC/JupyterHub** với Dask Gateway\n",
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"- ✅ Load dữ liệu từ **Microsoft Planetary Computer** (không cần ODC database)\n",
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"\n",
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"## 🎯 Nguồn dữ liệu:\n",
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"**Microsoft Planetary Computer STAC API**\n",
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"- Sentinel-2 L2A (optical)\n",
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"- Sentinel-1 RTC (SAR)\n",
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"\n",
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"## 🚀 Infrastructure:\n",
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"- **Dask Gateway**: Adaptive scaling (1-10 workers)\n",
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"- **Datacube**: Initialized nhưng không dùng để load data\n",
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"- **S3 Access**: Configured với requester_pays\n",
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"\n",
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"## 🔄 Workflow:\n",
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"1. Load data từ Planetary Computer (STAC API)\n",
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"2. Preprocessing (cloud mask, NDVI, resampling)\n",
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"3. Train Decision Tree model\n",
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"4. Evaluate & save model\n",
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"\n",
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"---\n"
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Application\",\"roots\":[{\"type\":\"object\",\"name\":\"panel.models.browser.BrowserInfo\",\"id\":\"p1002\"},{\"type\":\"object\",\"name\":\"panel.models.comm_manager.CommManager\",\"id\":\"p1003\",\"attributes\":{\"plot_id\":\"p1002\",\"comm_id\":\"c016a9b475574c0c8c936939409cc53b\",\"client_comm_id\":\"35ee740363b14bedbd6f18803d8aa796\"}}],\"defs\":[{\"type\":\"model\",\"name\":\"ReactiveHTML1\"},{\"type\":\"model\",\"name\":\"FlexBox1\",\"properties\":[{\"name\":\"align_content\",\"kind\":\"Any\",\"default\":\"flex-start\"},{\"name\":\"align_items\",\"kind\":\"Any\",\"default\":\"flex-start\"},{\"name\":\"flex_direction\",\"kind\":\"Any\",\"default\":\"row\"},{\"name\":\"flex_wrap\",\"kind\":\"Any\",\"default\":\"wrap\"},{\"name\":\"gap\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"justify_content\",\"kind\":\"Any\",\"default\":\"flex-start\"}]},{\"type\":\"model\",\"name\":\"FloatPanel1\",\"properties\":[{\"name\":\"config\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"contained\",\"kind\":\"Any\",\"default\":true},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"right-top\"},{\"name\":\"offsetx\",\"kind\":\"Any\",\"default\":null},{\"name\":\"offsety\",\"kind\":\"Any\",\"default\":null},{\"name\":\"theme\",\"kind\":\"Any\",\"default\":\"primary\"},{\"name\":\"status\",\"kind\":\"Any\",\"default\":\"normalized\"}]},{\"type\":\"model\",\"name\":\"GridStack1\",\"properties\":[{\"name\":\"mode\",\"kind\":\"Any\",\"default\":\"warn\"},{\"name\":\"ncols\",\"kind\":\"Any\",\"default\":null},{\"name\":\"nrows\",\"kind\":\"Any\",\"default\":null},{\"name\":\"allow_resize\",\"kind\":\"Any\",\"default\":true},{\"name\":\"allow_drag\",\"kind\":\"Any\",\"default\":true},{\"name\":\"state\",\"kind\":\"Any\",\"default\":[]}]},{\"type\":\"model\",\"name\":\"drag1\",\"properties\":[{\"name\":\"slider_width\",\"kind\":\"Any\",\"default\":5},{\"name\":\"slider_color\",\"kind\":\"Any\",\"default\":\"black\"},{\"name\":\"value\",\"kind\":\"Any\",\"default\":50}]},{\"type\":\"model\",\"name\":\"click1\",\"properties\":[{\"name\":\"terminal_output\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"debug_name\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"clears\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"FastWrapper1\",\"properties\":[{\"name\":\"object\",\"kind\":\"Any\",\"default\":null},{\"name\":\"style\",\"kind\":\"Any\",\"default\":null}]},{\"type\":\"model\",\"name\":\"NotificationAreaBase1\",\"properties\":[{\"name\":\"js_events\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"bottom-right\"},{\"name\":\"_clear\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"NotificationArea1\",\"properties\":[{\"name\":\"js_events\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"notifications\",\"kind\":\"Any\",\"default\":[]},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"bottom-right\"},{\"name\":\"_clear\",\"kind\":\"Any\",\"default\":0},{\"name\":\"types\",\"kind\":\"Any\",\"default\":[{\"type\":\"map\",\"entries\":[[\"type\",\"warning\"],[\"background\",\"#ffc107\"],[\"icon\",{\"type\":\"map\",\"entries\":[[\"className\",\"fas fa-exclamation-triangle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]},{\"type\":\"map\",\"entries\":[[\"type\",\"info\"],[\"background\",\"#007bff\"],[\"icon\",{\"type\":\"map\",\"entries\":[[\"className\",\"fas fa-info-circle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]}]}]},{\"type\":\"model\",\"name\":\"Notification\",\"properties\":[{\"name\":\"background\",\"kind\":\"Any\",\"default\":null},{\"name\":\"duration\",\"kind\":\"Any\",\"default\":3000},{\"name\":\"icon\",\"kind\":\"Any\",\"default\":null},{\"name\":\"message\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"notification_type\",\"kind\":\"Any\",\"default\":null},{\"name\":\"_destroyed\",\"kind\":\"Any\",\"default\":false}]},{\"type\":\"model\",\"name\":\"TemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"BootstrapTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"TemplateEditor1\",\"properties\":[{\"name\":\"layout\",\"kind\":\"Any\",\"default\":[]}]},{\"type\":\"model\",\"name\":\"MaterialTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"ReactiveESM1\"},{\"type\":\"model\",\"name\":\"JSComponent1\"},{\"type\":\"model\",\"name\":\"ReactComponent1\"},{\"type\":\"model\",\"name\":\"AnyWidgetComponent1\"},{\"type\":\"model\",\"name\":\"request_value1\",\"properties\":[{\"name\":\"fill\",\"kind\":\"Any\",\"default\":\"none\"},{\"name\":\"_synced\",\"kind\":\"Any\",\"default\":null},{\"name\":\"_request_sync\",\"kind\":\"Any\",\"default\":0}]}]}};\n",
|
|
" var render_items = [{\"docid\":\"31006b5c-a72e-4e9b-8dad-fc6eb4af8921\",\"roots\":{\"p1002\":\"b1cc595c-c73c-4181-a0f4-1632df73a60e\"},\"root_ids\":[\"p1002\"]}];\n",
|
|
" var docs = Object.values(docs_json)\n",
|
|
" if (!docs) {\n",
|
|
" return\n",
|
|
" }\n",
|
|
" const py_version = docs[0].version.replace('rc', '-rc.').replace('.dev', '-dev.')\n",
|
|
" async function embed_document(root) {\n",
|
|
" var Bokeh = get_bokeh(root)\n",
|
|
" await Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
|
|
" for (const render_item of render_items) {\n",
|
|
" for (const root_id of render_item.root_ids) {\n",
|
|
"\tconst id_el = document.getElementById(root_id)\n",
|
|
"\tif (id_el.children.length && id_el.children[0].hasAttribute('data-root-id')) {\n",
|
|
"\t const root_el = id_el.children[0]\n",
|
|
"\t root_el.id = root_el.id + '-rendered'\n",
|
|
"\t for (const child of root_el.children) {\n",
|
|
" // Ensure JupyterLab does not capture keyboard shortcuts\n",
|
|
" // see: https://jupyterlab.readthedocs.io/en/4.1.x/extension/notebook.html#keyboard-interaction-model\n",
|
|
"\t child.setAttribute('data-lm-suppress-shortcuts', 'true')\n",
|
|
"\t }\n",
|
|
"\t}\n",
|
|
" }\n",
|
|
" }\n",
|
|
" }\n",
|
|
" function get_bokeh(root) {\n",
|
|
" if (root.Bokeh === undefined) {\n",
|
|
" return null\n",
|
|
" } else if (root.Bokeh.version !== py_version) {\n",
|
|
" if (root.Bokeh.versions === undefined || !root.Bokeh.versions.has(py_version)) {\n",
|
|
"\treturn null\n",
|
|
" }\n",
|
|
" return root.Bokeh.versions.get(py_version);\n",
|
|
" } else if (root.Bokeh.version === py_version) {\n",
|
|
" return root.Bokeh\n",
|
|
" }\n",
|
|
" return null\n",
|
|
" }\n",
|
|
" function is_loaded(root) {\n",
|
|
" var Bokeh = get_bokeh(root)\n",
|
|
" return (Bokeh != null && Bokeh.Panel !== undefined)\n",
|
|
" }\n",
|
|
" if (is_loaded(root)) {\n",
|
|
" embed_document(root);\n",
|
|
" } else {\n",
|
|
" var attempts = 0;\n",
|
|
" var timer = setInterval(function(root) {\n",
|
|
" if (is_loaded(root)) {\n",
|
|
" clearInterval(timer);\n",
|
|
" embed_document(root);\n",
|
|
" } else if (document.readyState == \"complete\") {\n",
|
|
" attempts++;\n",
|
|
" if (attempts > 200) {\n",
|
|
" clearInterval(timer);\n",
|
|
"\t var Bokeh = get_bokeh(root)\n",
|
|
"\t if (Bokeh == null || Bokeh.Panel == null) {\n",
|
|
" console.warn(\"Panel: ERROR: Unable to run Panel code because Bokeh or Panel library is missing\");\n",
|
|
"\t } else {\n",
|
|
"\t console.warn(\"Panel: WARNING: Attempting to render but not all required libraries could be resolved.\")\n",
|
|
"\t embed_document(root)\n",
|
|
"\t }\n",
|
|
" }\n",
|
|
" }\n",
|
|
" }, 25, root)\n",
|
|
" }\n",
|
|
"})(window);</script>"
|
|
]
|
|
},
|
|
"metadata": {
|
|
"application/vnd.holoviews_exec.v0+json": {
|
|
"id": "p1002"
|
|
}
|
|
},
|
|
"output_type": "display_data"
|
|
},
|
|
{
|
|
"data": {
|
|
"text/html": [
|
|
"<script type=\"esms-options\">{\"shimMode\": true}</script><style>*[data-root-id],\n",
|
|
"*[data-root-id] > * {\n",
|
|
" box-sizing: border-box;\n",
|
|
" font-family: var(--jp-ui-font-family);\n",
|
|
" font-size: var(--jp-ui-font-size1);\n",
|
|
" color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
|
|
"}\n",
|
|
"\n",
|
|
"/* Override VSCode background color */\n",
|
|
".cell-output-ipywidget-background:has(\n",
|
|
" > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
|
|
" ),\n",
|
|
".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
|
|
" background-color: transparent !important;\n",
|
|
"}\n",
|
|
"</style>"
|
|
]
|
|
},
|
|
"metadata": {},
|
|
"output_type": "display_data"
|
|
},
|
|
{
|
|
"data": {
|
|
"application/javascript": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const py_version = '3.6.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; i < links.length; i++) {\n const link = links[i]\n if (link.href != null) {\n existing_stylesheets.push(link.href)\n }\n }\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const escaped = encodeURI(url)\n if (existing_stylesheets.indexOf(escaped) !== -1) {\n on_load()\n continue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } var existing_scripts = []\n const scripts = document.getElementsByTagName('script')\n for (let i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n existing_scripts.push(script.src)\n }\n }\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (let i = 0; i < js_modules.length; i++) {\n const url = js_modules[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n const url = js_exports[name];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.holoviz.org/panel/1.5.3/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n const js_modules = [];\n const js_exports = {};\n const css_urls = [];\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (let i = 0; i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n var NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh.versions.set(NewBokeh.version, NewBokeh)\n }\n root.Bokeh = Bokeh;\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));",
|
|
"application/vnd.holoviews_load.v0+json": ""
|
|
},
|
|
"metadata": {},
|
|
"output_type": "display_data"
|
|
},
|
|
{
|
|
"data": {
|
|
"application/javascript": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n",
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"application/vnd.holoviews_load.v0+json": ""
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},
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"metadata": {},
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"output_type": "display_data"
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},
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"======================================================================\n",
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"📦 Data Loading Module (No ODC Database Required)\n",
|
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"======================================================================\n",
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"\n",
|
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"💡 Usage:\n",
|
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" from load_data_no_odc import load_and_process_s2, load_and_process_s1\n",
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"\n",
|
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" bbox = (lon_min, lat_min, lon_max, lat_max)\n",
|
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" date_range = ('2022-09-01', '2023-10-01')\n",
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"\n",
|
|
" data_s2 = load_and_process_s2(bbox, date_range)\n",
|
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" data_s1 = load_and_process_s1(bbox, date_range)\n",
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"\n",
|
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" # Load training data\n",
|
|
" train = load_train_data('train/data.shp', label_mapping)\n",
|
|
" X, y = extract_features_at_points(train, data_s2, data_s1)\n",
|
|
" X_train, X_val, X_test, y_train, y_val, y_test = split_train_data(X, y)\n",
|
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"======================================================================\n",
|
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"\n",
|
|
"======================================================================\n",
|
|
"📦 Data Loading Module (No ODC Database Required)\n",
|
|
"======================================================================\n",
|
|
"\n",
|
|
"💡 Usage:\n",
|
|
" from load_data_no_odc import load_and_process_s2, load_and_process_s1\n",
|
|
"\n",
|
|
" bbox = (lon_min, lat_min, lon_max, lat_max)\n",
|
|
" date_range = ('2022-09-01', '2023-10-01')\n",
|
|
"\n",
|
|
" data_s2 = load_and_process_s2(bbox, date_range)\n",
|
|
" data_s1 = load_and_process_s1(bbox, date_range)\n",
|
|
"\n",
|
|
" # Load training data\n",
|
|
" train = load_train_data('train/data.shp', label_mapping)\n",
|
|
" X, y = extract_features_at_points(train, data_s2, data_s1)\n",
|
|
" X_train, X_val, X_test, y_train, y_val, y_test = split_train_data(X, y)\n",
|
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"======================================================================\n",
|
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"\n"
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]
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},
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{
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"data": {
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"text/html": [
|
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"<script type=\"esms-options\">{\"shimMode\": true}</script><style>*[data-root-id],\n",
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"*[data-root-id] > * {\n",
|
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" box-sizing: border-box;\n",
|
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" font-family: var(--jp-ui-font-family);\n",
|
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" font-size: var(--jp-ui-font-size1);\n",
|
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" color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
|
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"}\n",
|
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"\n",
|
|
"/* Override VSCode background color */\n",
|
|
".cell-output-ipywidget-background:has(\n",
|
|
" > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
|
|
" ),\n",
|
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".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
|
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" background-color: transparent !important;\n",
|
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"}\n",
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"</style>"
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]
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},
|
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"metadata": {},
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"output_type": "display_data"
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},
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{
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"data": {
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"application/javascript": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const py_version = '3.6.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; 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i < js_modules.length; i++) {\n const url = js_modules[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n const url = js_exports[name];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.holoviz.org/panel/1.5.3/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n const js_modules = [];\n const js_exports = {};\n const css_urls = [];\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (let i = 0; i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n var NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh.versions.set(NewBokeh.version, NewBokeh)\n }\n root.Bokeh = Bokeh;\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));",
|
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"application/vnd.holoviews_load.v0+json": ""
|
|
},
|
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"metadata": {},
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"output_type": "display_data"
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},
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{
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"data": {
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"application/javascript": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n 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toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } 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{});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n",
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i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n var NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh.versions.set(NewBokeh.version, NewBokeh)\n }\n root.Bokeh = Bokeh;\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));",
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"application/vnd.holoviews_load.v0+json": ""
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},
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"metadata": {},
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"output_type": "display_data"
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},
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{
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"data": {
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"application/javascript": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n",
|
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"application/vnd.holoviews_load.v0+json": ""
|
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},
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"metadata": {},
|
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"output_type": "display_data"
|
|
},
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|
{
|
|
"name": "stdout",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"✅ All modules loaded successfully!\n",
|
|
"📡 Data source: Microsoft Planetary Computer\n",
|
|
"🚀 Infrastructure: Dask Gateway + ODC\n",
|
|
"CPU times: user 19.2 s, sys: 3.35 s, total: 22.5 s\n",
|
|
"Wall time: 13.9 s\n"
|
|
]
|
|
}
|
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],
|
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"source": [
|
|
"%%time\n",
|
|
"%matplotlib inline\n",
|
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"\n",
|
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"import sys\n",
|
|
"import os\n",
|
|
"sys.path.insert(0, '/home/jovyan/remote-sensing')\n",
|
|
"\n",
|
|
"# Import ODC modules for Dask Gateway and Datacube\n",
|
|
"import datacube\n",
|
|
"from easi_tools import notebook_utils\n",
|
|
"\n",
|
|
"# Import module load dữ liệu không cần ODC database\n",
|
|
"import importlib\n",
|
|
"import load_data_no_odc\n",
|
|
"importlib.reload(load_data_no_odc)\n",
|
|
"\n",
|
|
"%matplotlib inline\n",
|
|
"\n",
|
|
"import importlib\n",
|
|
"import new_import_ODC \n",
|
|
"\n",
|
|
"importlib.reload(new_import_ODC)\n",
|
|
"\n",
|
|
"from new_import_ODC import *\n",
|
|
"\n",
|
|
"\n",
|
|
"from load_data_no_odc import (\n",
|
|
" load_and_process_s2,\n",
|
|
" load_and_process_s1,\n",
|
|
" load_sentinel2_stac,\n",
|
|
" load_sentinel1_stac,\n",
|
|
" mask_clean_s2,\n",
|
|
" calculate_ndvi,\n",
|
|
" fill_nan_temporal,\n",
|
|
" resample_monthly\n",
|
|
")\n",
|
|
"\n",
|
|
"# Standard imports\n",
|
|
"import numpy as np\n",
|
|
"import pandas as pd\n",
|
|
"import xarray as xr\n",
|
|
"import matplotlib.pyplot as plt\n",
|
|
"import seaborn as sns\n",
|
|
"sns.set_style('whitegrid')\n",
|
|
"\n",
|
|
"# ML imports\n",
|
|
"from sklearn.tree import DecisionTreeClassifier\n",
|
|
"from sklearn.model_selection import train_test_split\n",
|
|
"from sklearn.metrics import classification_report, confusion_matrix, accuracy_score\n",
|
|
"import joblib\n",
|
|
"import json\n",
|
|
"from datetime import datetime\n",
|
|
"\n",
|
|
"print(\"✅ All modules loaded successfully!\")\n",
|
|
"print(\"📡 Data source: Microsoft Planetary Computer\")\n",
|
|
"print(\"🚀 Infrastructure: Dask Gateway + ODC\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "53397b2f",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 🚀 Step 1: Initialize Dask Gateway + Datacube\n",
|
|
"\n",
|
|
"Khởi tạo Dask Gateway với adaptive scaling và cấu hình S3 access\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 2,
|
|
"id": "3c4d6779",
|
|
"metadata": {},
|
|
"outputs": [
|
|
{
|
|
"name": "stdout",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"🚀 Step 1: Dask Gateway + Datacube Initialization\n",
|
|
"======================================================================\n",
|
|
"An existing cluster was found. Connecting to: easihub.c5ddeea2a5f442fdb346e0bfe686a138\n",
|
|
"\n",
|
|
"✅ Dask Gateway + Datacube + S3 ready!\n",
|
|
" Dask dashboard: https://hub.asia.easi-eo.solutions/services/dask-gateway/clusters/easihub.c5ddeea2a5f442fdb346e0bfe686a138/status\n",
|
|
" Workers: Adaptive scaling (1-10)\n",
|
|
"======================================================================\n"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"\n",
|
|
"print(\"🚀 Step 1: Dask Gateway + Datacube Initialization\")\n",
|
|
"print(\"=\" * 70)\n",
|
|
"\n",
|
|
"\n",
|
|
"# Cấu hình Dask Gateway\n",
|
|
"cluster, client = notebook_utils.initialize_dask(use_gateway=True, workers=(1, 10))\n",
|
|
"\n",
|
|
"# Khai báo Datacube\n",
|
|
"dc = datacube.Datacube()\n",
|
|
"\n",
|
|
"# Cấu hình truy cập dịch vụ S3\n",
|
|
"configure_s3_access(aws_unsigned=False, requester_pays=True, client=client)\n",
|
|
"\n",
|
|
"print(f\"\\n✅ Dask Gateway + Datacube + S3 ready!\")\n",
|
|
"print(f\" Dask dashboard: {client.dashboard_link}\")\n",
|
|
"print(f\" Workers: Adaptive scaling (1-10)\")\n",
|
|
"print(\"=\" * 70)\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "28bc5035",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 📍 Step 2: Define Area of Interest (AOI)\n",
|
|
"\n",
|
|
"Định nghĩa vùng nghiên cứu và khoảng thời gian"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 3,
|
|
"id": "15a5291c",
|
|
"metadata": {},
|
|
"outputs": [
|
|
{
|
|
"name": "stdout",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"📍 Area of Interest:\n",
|
|
" Bbox: (105.5, 9.2, 106.4, 10.0)\n",
|
|
" Lon range: 105.5 to 106.4\n",
|
|
" Lat range: 9.2 to 10.0\n",
|
|
" Date range: 2022-09-01 to 2023-10-01\n",
|
|
"======================================================================\n"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"# Cấu hình vùng và thời gian\n",
|
|
"date_range = (\"2022-09-01\", \"2023-10-01\")\n",
|
|
"\n",
|
|
"# Bounding box: (lon_min, lat_min, lon_max, lat_max)\n",
|
|
"bbox = (105.5, 9.2, 106.4, 10.0) # Khu vực Mekong Delta\n",
|
|
"\n",
|
|
"print(\"📍 Area of Interest:\")\n",
|
|
"print(f\" Bbox: {bbox}\")\n",
|
|
"print(f\" Lon range: {bbox[0]} to {bbox[2]}\")\n",
|
|
"print(f\" Lat range: {bbox[1]} to {bbox[3]}\")\n",
|
|
"print(f\" Date range: {date_range[0]} to {date_range[1]}\")\n",
|
|
"print(\"=\" * 70)"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "422e498e",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 📥 Step 3: Load Sentinel-2 Data\n",
|
|
"\n",
|
|
"Load dữ liệu Sentinel-2 L2A từ Planetary Computer"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 4,
|
|
"id": "611cd1c2",
|
|
"metadata": {},
|
|
"outputs": [
|
|
{
|
|
"name": "stdout",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"📥 Loading Sentinel-2 data from Planetary Computer...\n",
|
|
"----------------------------------------------------------------------\n",
|
|
"🔍 Searching Sentinel-2 data...\n",
|
|
" Bbox: (105.5, 9.2, 106.4, 10.0)\n",
|
|
" Date: 2022-09-01 to 2023-10-01\n",
|
|
" Bands: ['red', 'nir', 'blue', 'green', 'nir08', 'swir16', 'swir22', 'SCL']\n",
|
|
"✅ Found 777 Sentinel-2 scenes\n",
|
|
"📥 Loading data...\n",
|
|
"❌ Error loading data: No such band/alias: nir08\n",
|
|
"❌ Failed to load Sentinel-2 data\n",
|
|
"CPU times: user 1.01 s, sys: 20.1 ms, total: 1.03 s\n",
|
|
"Wall time: 7.16 s\n"
|
|
]
|
|
},
|
|
{
|
|
"name": "stderr",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"Traceback (most recent call last):\n",
|
|
" File \"/home/jovyan/remote-sensing/load_data_no_odc.py\", line 71, in load_sentinel2_stac\n",
|
|
" data = odc.stac.load(\n",
|
|
" ^^^^^^^^^^^^^^\n",
|
|
" File \"/env/lib/python3.12/site-packages/odc/stac/_stac_load.py\", line 358, in load\n",
|
|
" gbox = output_geobox(\n",
|
|
" ^^^^^^^^^^^^^^\n",
|
|
" File \"/env/lib/python3.12/site-packages/odc/stac/_mdtools.py\", line 971, in output_geobox\n",
|
|
" rr = _auto_load_params(items, bands)\n",
|
|
" ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n",
|
|
" File \"/env/lib/python3.12/site-packages/odc/stac/_mdtools.py\", line 784, in _auto_load_params\n",
|
|
" geoboxes = [gbox for gbox in map(_extract_gbox, items) if gbox is not None]\n",
|
|
" ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n",
|
|
" File \"/env/lib/python3.12/site-packages/odc/stac/_mdtools.py\", line 781, in _extract_gbox\n",
|
|
" gbx = item.geoboxes(bands)\n",
|
|
" ^^^^^^^^^^^^^^^^^^^^\n",
|
|
" File \"/env/lib/python3.12/site-packages/odc/stac/model.py\", line 244, in geoboxes\n",
|
|
" b = self.bands.get(self.collection.band_key(name), None)\n",
|
|
" ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n",
|
|
" File \"/env/lib/python3.12/site-packages/odc/stac/model.py\", line 144, in band_key\n",
|
|
" raise ValueError(f\"No such band/alias: {band}\")\n",
|
|
"ValueError: No such band/alias: nir08\n"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"%%time\n",
|
|
"\n",
|
|
"print(\"📥 Loading Sentinel-2 data from Planetary Computer...\")\n",
|
|
"print(\"-\" * 70)\n",
|
|
"\n",
|
|
"# Load và xử lý Sentinel-2: cloud mask + NDVI + monthly resampling\n",
|
|
"data_sen2_monthly = load_and_process_s2(\n",
|
|
" bbox=bbox,\n",
|
|
" date_range=date_range,\n",
|
|
" apply_cloud_mask=True,\n",
|
|
" calculate_indices=True\n",
|
|
")\n",
|
|
"\n",
|
|
"if data_sen2_monthly is not None:\n",
|
|
" print(f\"\\n✅ Sentinel-2 monthly data loaded!\")\n",
|
|
" print(f\" Dimensions: {dict(data_sen2_monthly.dims)}\")\n",
|
|
" print(f\" Variables: {list(data_sen2_monthly.data_vars)}\")\n",
|
|
" print(f\" Time steps: {len(data_sen2_monthly.time)}\")\n",
|
|
" \n",
|
|
" # Compute to load into memory\n",
|
|
" data_sen2_monthly = data_sen2_monthly.compute()\n",
|
|
" print(f\" ✓ Data computed and loaded into memory\")\n",
|
|
"else:\n",
|
|
" print(\"❌ Failed to load Sentinel-2 data\")"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "79ef9736",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 📥 Step 4: Load Sentinel-1 Data\n",
|
|
"\n",
|
|
"Load dữ liệu Sentinel-1 RTC (SAR) từ Planetary Computer"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "3bda3dc0",
|
|
"metadata": {},
|
|
"outputs": [
|
|
{
|
|
"name": "stdout",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"📥 Loading Sentinel-1 data from Planetary Computer...\n",
|
|
"----------------------------------------------------------------------\n",
|
|
"🔍 Searching Sentinel-1 data...\n",
|
|
" Bbox: (105.5, 9.2, 106.4, 10.0)\n",
|
|
" Date: 2022-09-01 to 2023-10-01\n",
|
|
" Bands: ['vv', 'vh']\n",
|
|
"✅ Found 149 Sentinel-1 scenes\n",
|
|
"📥 Loading data...\n",
|
|
"✅ Loaded Sentinel-1 data: FrozenMappingWarningOnValuesAccess({'y': 8874, 'x': 9902, 'time': 64})\n",
|
|
" Shape: {'y': 8874, 'x': 9902, 'time': 64}\n",
|
|
" Bands: ['VV', 'VH']\n",
|
|
"📅 Resampling to monthly using mean...\n",
|
|
"✅ Resampled to monthly: FrozenMappingWarningOnValuesAccess({'time': 13, 'y': 8874, 'x': 9902})\n",
|
|
"\n",
|
|
"✅ Sentinel-1 monthly data loaded!\n",
|
|
" Dimensions: {'time': 13, 'y': 8874, 'x': 9902}\n",
|
|
" Variables: ['VV', 'VH']\n",
|
|
" Time steps: 13\n"
|
|
]
|
|
},
|
|
{
|
|
"name": "stderr",
|
|
"output_type": "stream",
|
|
"text": [
|
|
"/home/jovyan/remote-sensing/load_data_no_odc.py:158: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`.\n",
|
|
" print(f\" Shape: {dict(data.dims)}\")\n",
|
|
"<timed exec>:12: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`.\n"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"%%time\n",
|
|
"\n",
|
|
"print(\"📥 Loading Sentinel-1 data from Planetary Computer...\")\n",
|
|
"print(\"-\" * 70)\n",
|
|
"\n",
|
|
"# Load và xử lý Sentinel-1: monthly resampling\n",
|
|
"data_sen1_monthly = load_and_process_s1(\n",
|
|
" bbox=bbox,\n",
|
|
" date_range=date_range\n",
|
|
")\n",
|
|
"\n",
|
|
"if data_sen1_monthly is not None:\n",
|
|
" print(f\"\\n✅ Sentinel-1 monthly data loaded!\")\n",
|
|
" print(f\" Dimensions: {dict(data_sen1_monthly.dims)}\")\n",
|
|
" print(f\" Variables: {list(data_sen1_monthly.data_vars)}\")\n",
|
|
" print(f\" Time steps: {len(data_sen1_monthly.time)}\")\n",
|
|
" \n",
|
|
" # Compute to load into memory\n",
|
|
" data_sen1_monthly = data_sen1_monthly.compute()\n",
|
|
" print(f\" ✓ Data computed and loaded into memory\")\n",
|
|
"else:\n",
|
|
" print(\"❌ Failed to load Sentinel-1 data\")"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "de80d48d",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 🎯 Step 5: Load Training Data\n",
|
|
"\n",
|
|
"Load dữ liệu mẫu huấn luyện (training samples)"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "70925d09",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"from load_data_no_odc import load_train_data\n",
|
|
"\n",
|
|
"# Ánh xạ nhãn lớp đất\n",
|
|
"label_mapping = {\n",
|
|
" \"Lua tom\": 0,\n",
|
|
" \"Lua\": 1,\n",
|
|
" \"CHN\": 2,\n",
|
|
" \"CLN\": 3,\n",
|
|
" \"TS\": 4,\n",
|
|
" \"Song\": 5,\n",
|
|
" \"Dat xay dung\": 6,\n",
|
|
" \"Rung\": 7,\n",
|
|
"}\n",
|
|
"\n",
|
|
"print(\"🎯 Label mapping:\")\n",
|
|
"for label, idx in label_mapping.items():\n",
|
|
" print(f\" {idx}: {label}\")\n",
|
|
"\n",
|
|
"# Load training data from AWS shapefile\n",
|
|
"train_path = \"train/ST_training_data_updated_1130points_new.shp\"\n",
|
|
"\n",
|
|
"print(f\"\\n📂 Loading training data from: {train_path}\")\n",
|
|
"train_data = load_train_data(train_path, label_mapping)\n",
|
|
"\n",
|
|
"if train_data is not None:\n",
|
|
" print(f\"\\n✅ Training data loaded successfully!\")\n",
|
|
" print(f\" Total points: {len(train_data)}\")\n",
|
|
" print(f\" CRS: {train_data.crs}\")\n",
|
|
"else:\n",
|
|
" print(\"❌ Failed to load training data\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "fed9a8f1",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 🔧 Step 6: Extract Features\n",
|
|
"\n",
|
|
"Trích xuất features từ Sentinel-1 và Sentinel-2 tại các điểm mẫu"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "62c41cd0",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"%%time\n",
|
|
"from load_data_no_odc import extract_features_at_points\n",
|
|
"\n",
|
|
"print(\"🔧 Extracting features from satellite data...\")\n",
|
|
"print(\"-\" * 70)\n",
|
|
"\n",
|
|
"if train_data is not None and \\\n",
|
|
" data_sen2_monthly is not None and \\\n",
|
|
" data_sen1_monthly is not None:\n",
|
|
" \n",
|
|
" # Extract features at training point locations\n",
|
|
" X, y = extract_features_at_points(\n",
|
|
" train_data, \n",
|
|
" data_sen2_monthly, \n",
|
|
" data_sen1_monthly\n",
|
|
" )\n",
|
|
" \n",
|
|
" print(f\"\\n✅ Feature extraction complete!\")\n",
|
|
" print(f\" Total samples: {len(X)}\")\n",
|
|
" print(f\" Feature dimension: {X.shape[1]}\")\n",
|
|
" print(f\" Classes: {sorted(set(y.tolist()))}\")\n",
|
|
" print(f\" Class distribution:\")\n",
|
|
" \n",
|
|
" import pandas as pd\n",
|
|
" class_counts = pd.Series(y).value_counts().sort_index()\n",
|
|
" for class_id, count in class_counts.items():\n",
|
|
" class_name = [k for k, v in label_mapping.items() if v == class_id][0]\n",
|
|
" print(f\" {class_id} ({class_name}): {count} samples ({count/len(y)*100:.1f}%)\")\n",
|
|
" \n",
|
|
"else:\n",
|
|
" print(\"❌ Missing data: Please check training data or satellite data\")\n",
|
|
" print(f\" train_data: {'✓' if train_data is not None else '✗'}\")\n",
|
|
" print(f\" data_sen2_monthly: {'✓' if data_sen2_monthly is not None else '✗'}\")\n",
|
|
" print(f\" data_sen1_monthly: {'✓' if data_sen1_monthly is not None else '✗'}\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "f7cd0ca2",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 📊 Step 7: Split Data\n",
|
|
"\n",
|
|
"Chia dữ liệu thành train/val/test sets"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "523e1249",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"from load_data_no_odc import split_train_data\n",
|
|
"\n",
|
|
"if 'X' in locals() and 'y' in locals():\n",
|
|
" # Split data into train/val/test sets\n",
|
|
" X_train, X_val, X_test, y_train, y_val, y_test = split_train_data(\n",
|
|
" X, y, \n",
|
|
" test_size=0.2, \n",
|
|
" val_size=0.1, \n",
|
|
" random_state=42\n",
|
|
" )\n",
|
|
" \n",
|
|
" # Combine train + val for final model training\n",
|
|
" X_fit = np.concatenate([X_train, X_val], axis=0)\n",
|
|
" y_fit = np.concatenate([y_train, y_val], axis=0)\n",
|
|
" \n",
|
|
" print(f\"\\n✅ Final training set:\")\n",
|
|
" print(f\" X_fit shape: {X_fit.shape}\")\n",
|
|
" print(f\" y_fit shape: {y_fit.shape}\")\n",
|
|
" print(f\"\\n X_test shape: {X_test.shape}\")\n",
|
|
" print(f\" y_test shape: {y_test.shape}\")\n",
|
|
" \n",
|
|
"else:\n",
|
|
" print(\"❌ Features not extracted yet. Please run Step 6 first.\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "a469500c",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 🌲 Step 8: Train Decision Tree Model\n",
|
|
"\n",
|
|
"Huấn luyện mô hình Decision Tree"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "445c2d92",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"%%time\n",
|
|
"from sklearn.tree import DecisionTreeClassifier\n",
|
|
"\n",
|
|
"if 'X_fit' in locals() and 'y_fit' in locals():\n",
|
|
" \n",
|
|
" print(\"🚀 Training Decision Tree model...\")\n",
|
|
" print(\"-\" * 70)\n",
|
|
" \n",
|
|
" # Train Decision Tree with tuned hyperparameters\n",
|
|
" model = DecisionTreeClassifier(\n",
|
|
" max_depth=30,\n",
|
|
" min_samples_leaf=2,\n",
|
|
" min_samples_split=5,\n",
|
|
" class_weight=\"balanced\",\n",
|
|
" random_state=42,\n",
|
|
" )\n",
|
|
" \n",
|
|
" model.fit(X_fit, y_fit)\n",
|
|
" \n",
|
|
" # Evaluate on validation set\n",
|
|
" val_acc = model.score(X_val, y_val)\n",
|
|
" \n",
|
|
" print(f\"\\n✅ Training complete!\")\n",
|
|
" print(f\" Model: Decision Tree\")\n",
|
|
" print(f\" Tree depth: {model.get_depth()}\")\n",
|
|
" print(f\" Number of leaves: {model.get_n_leaves()}\")\n",
|
|
" print(f\" Training samples: {len(X_fit)}\")\n",
|
|
" print(f\" Validation accuracy: {val_acc:.4f} ({val_acc*100:.2f}%)\")\n",
|
|
" \n",
|
|
"else:\n",
|
|
" print(\"❌ Data not ready. Please run Step 7 first.\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "7c1e681e",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 📈 Step 9: Hyperparameter Analysis\n",
|
|
"\n",
|
|
"Phân tích độ sâu tối ưu (max_depth) cho Decision Tree"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "d13274e4",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"%%time\n",
|
|
"import matplotlib.pyplot as plt\n",
|
|
"\n",
|
|
"if 'X_fit' in locals() and 'X_val' in locals():\n",
|
|
" \n",
|
|
" DEPTH_RANGE = list(range(1, 51))\n",
|
|
" \n",
|
|
" train_accs = []\n",
|
|
" val_accs = []\n",
|
|
" \n",
|
|
" print(\"🔍 Analyzing optimal max_depth for Decision Tree...\")\n",
|
|
" print(\"-\" * 70)\n",
|
|
" print(\"Testing depths from 1 to 50...\")\n",
|
|
" \n",
|
|
" for d in DEPTH_RANGE:\n",
|
|
" m = DecisionTreeClassifier(\n",
|
|
" min_samples_leaf=2,\n",
|
|
" min_samples_split=5,\n",
|
|
" class_weight=\"balanced\",\n",
|
|
" random_state=42,\n",
|
|
" max_depth=d,\n",
|
|
" )\n",
|
|
" m.fit(X_fit, y_fit)\n",
|
|
" train_accs.append(m.score(X_fit, y_fit))\n",
|
|
" val_accs.append(m.score(X_val, y_val))\n",
|
|
" \n",
|
|
" if d % 10 == 0:\n",
|
|
" print(f\" Depth {d:2d}: train={train_accs[-1]:.4f}, val={val_accs[-1]:.4f}\")\n",
|
|
" \n",
|
|
" train_accs = np.array(train_accs)\n",
|
|
" val_accs = np.array(val_accs)\n",
|
|
" \n",
|
|
" best_depth = DEPTH_RANGE[np.argmax(val_accs)]\n",
|
|
" best_val_acc = np.max(val_accs)\n",
|
|
" \n",
|
|
" print(f\"\\n✅ Optimal max_depth: {best_depth}\")\n",
|
|
" print(f\" Best validation accuracy: {best_val_acc:.4f} ({best_val_acc*100:.2f}%)\")\n",
|
|
" \n",
|
|
" # Plot convergence analysis\n",
|
|
" fig, ax = plt.subplots(1, 1, figsize=(12, 5))\n",
|
|
" ax.plot(DEPTH_RANGE, train_accs, 'b-o', markersize=3, label='Train Accuracy')\n",
|
|
" ax.plot(DEPTH_RANGE, val_accs, 'g-o', markersize=3, label='Validation Accuracy')\n",
|
|
" ax.axvline(x=best_depth, color='red', linestyle='--', linewidth=2, \n",
|
|
" label=f'Best Depth = {best_depth}')\n",
|
|
" ax.set_xlabel('max_depth', fontsize=12)\n",
|
|
" ax.set_ylabel('Accuracy', fontsize=12)\n",
|
|
" ax.set_title('Decision Tree: Training vs Validation Accuracy', fontsize=14, fontweight='bold')\n",
|
|
" ax.legend(fontsize=10)\n",
|
|
" ax.grid(True, alpha=0.3)\n",
|
|
" plt.tight_layout()\n",
|
|
" plt.show()\n",
|
|
" \n",
|
|
"else:\n",
|
|
" print(\"❌ Data not ready. Please run Step 7 first.\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "b551cdb4",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 📊 Step 10: Evaluate Model\n",
|
|
"\n",
|
|
"Đánh giá mô hình trên tập test"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "bc3d6b9a",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"from sklearn.metrics import accuracy_score, classification_report, confusion_matrix\n",
|
|
"import seaborn as sns\n",
|
|
"\n",
|
|
"if 'model' in locals() and 'X_test' in locals():\n",
|
|
" \n",
|
|
" print(\"📊 Evaluating model on test set...\")\n",
|
|
" print(\"-\" * 70)\n",
|
|
" \n",
|
|
" # Make predictions\n",
|
|
" y_pred = model.predict(X_test)\n",
|
|
" acc = accuracy_score(y_test, y_pred)\n",
|
|
" \n",
|
|
" print(f\"\\n🎯 Test Accuracy: {acc:.4f} ({acc*100:.2f}%)\\n\")\n",
|
|
" print(\"📋 Classification Report:\")\n",
|
|
" print(classification_report(y_test, y_pred, digits=4))\n",
|
|
" \n",
|
|
" # Confusion Matrix\n",
|
|
" class_names = list(label_mapping.keys())\n",
|
|
" cm = confusion_matrix(y_test, y_pred)\n",
|
|
" \n",
|
|
" plt.figure(figsize=(10, 8))\n",
|
|
" sns.heatmap(cm, annot=True, fmt='d', cmap='Greens',\n",
|
|
" xticklabels=class_names, yticklabels=class_names,\n",
|
|
" cbar_kws={'label': 'Count'})\n",
|
|
" plt.xlabel('Predicted Label', fontsize=12)\n",
|
|
" plt.ylabel('True Label', fontsize=12)\n",
|
|
" plt.title('Confusion Matrix — Decision Tree (Test Set)', fontsize=14, fontweight='bold')\n",
|
|
" plt.tight_layout()\n",
|
|
" plt.show()\n",
|
|
" \n",
|
|
"else:\n",
|
|
" print(\"❌ Model not trained yet. Please run Step 8 first.\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "44d226fc",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 💾 Step 11: Save Model\n",
|
|
"\n",
|
|
"Lưu mô hình và metadata"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "044eefc4",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"import joblib\n",
|
|
"import json\n",
|
|
"from datetime import datetime\n",
|
|
"\n",
|
|
"if 'model' in locals() and 'acc' in locals():\n",
|
|
" \n",
|
|
" print(\"💾 Saving model and metadata...\")\n",
|
|
" print(\"-\" * 70)\n",
|
|
" \n",
|
|
" # Save model\n",
|
|
" model_path = \"model_decision_tree_planetary_computer.joblib\"\n",
|
|
" joblib.dump(model, model_path)\n",
|
|
" print(f\"✅ Model saved → {model_path}\")\n",
|
|
" \n",
|
|
" # Create metadata\n",
|
|
" info = {\n",
|
|
" \"model_type\": \"DecisionTree\",\n",
|
|
" \"data_source\": \"Microsoft Planetary Computer\",\n",
|
|
" \"training_data\": train_path,\n",
|
|
" \"max_depth\": int(model.get_depth()),\n",
|
|
" \"n_leaves\": int(model.get_n_leaves()),\n",
|
|
" \"n_features\": int(X_fit.shape[1]),\n",
|
|
" \"label_mapping\": label_mapping,\n",
|
|
" \"test_accuracy\": float(acc),\n",
|
|
" \"train_samples\": int(len(X_fit)),\n",
|
|
" \"val_samples\": int(len(X_val)),\n",
|
|
" \"test_samples\": int(len(X_test)),\n",
|
|
" \"bbox\": bbox,\n",
|
|
" \"date_range\": list(date_range),\n",
|
|
" \"saved_at\": datetime.now().isoformat(),\n",
|
|
" \"hyperparameters\": {\n",
|
|
" \"max_depth\": 30,\n",
|
|
" \"min_samples_leaf\": 2,\n",
|
|
" \"min_samples_split\": 5,\n",
|
|
" \"class_weight\": \"balanced\",\n",
|
|
" \"random_state\": 42\n",
|
|
" }\n",
|
|
" }\n",
|
|
" \n",
|
|
" # Save metadata\n",
|
|
" info_path = \"model_decision_tree_planetary_computer_info.json\"\n",
|
|
" with open(info_path, \"w\") as f:\n",
|
|
" json.dump(info, f, indent=2, ensure_ascii=False)\n",
|
|
" \n",
|
|
" print(f\"✅ Metadata saved → {info_path}\")\n",
|
|
" print(\"\\n📋 Model Info:\")\n",
|
|
" print(json.dumps(info, indent=2, ensure_ascii=False))\n",
|
|
" \n",
|
|
"else:\n",
|
|
" print(\"❌ Model not trained yet or evaluation not complete.\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "18c95152",
|
|
"metadata": {},
|
|
"source": [
|
|
"## 🧹 Step 12: Cleanup\n",
|
|
"\n",
|
|
"Đóng Dask cluster"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "20445068",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": [
|
|
"# Close Dask Gateway cluster\n",
|
|
"try:\n",
|
|
" client.close()\n",
|
|
" cluster.close()\n",
|
|
" print(\"✅ Dask Gateway cluster closed.\")\n",
|
|
"except Exception as e:\n",
|
|
" print(f\"⚠ Error closing cluster: {e}\")\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "markdown",
|
|
"id": "046bf0f9",
|
|
"metadata": {},
|
|
"source": [
|
|
"---\n",
|
|
"\n",
|
|
"## ✅ Summary\n",
|
|
"\n",
|
|
"### Notebook này:\n",
|
|
"- ✅ Chạy trên **Server ODC/JupyterHub** với **Dask Gateway**\n",
|
|
"- ✅ Load dữ liệu từ **Microsoft Planetary Computer** qua STAC API\n",
|
|
"- ✅ Không cần **ODC Database** để load data (dùng Planetary Computer)\n",
|
|
"- ✅ Sử dụng infrastructure của ODC (Dask Gateway, S3 access)\n",
|
|
"- ✅ Tương thích 100% với dữ liệu ODC\n",
|
|
"\n",
|
|
"### Ưu điểm của approach này:\n",
|
|
"1. **Scalability**: Dask Gateway adaptive scaling (1-10 workers)\n",
|
|
"2. **Public data**: Planetary Computer không cần VPN/private network\n",
|
|
"3. **Consistent**: Cùng infrastructure với ODC training pipeline\n",
|
|
"4. **Flexible**: Có thể train trên Planetary Computer, predict trên ODC hoặc ngược lại\n",
|
|
"\n",
|
|
"### Workflow train/predict:\n",
|
|
"1. **Train trên server ODC**: Chạy notebook này với Dask Gateway\n",
|
|
"2. **Save model**: Export `.joblib` file \n",
|
|
"3. **Predict qua API**: api_server.py tự động dùng Planetary Computer\n",
|
|
"\n",
|
|
"### Architecture:\n",
|
|
"```\n",
|
|
"┌─────────────────────────────────────┐\n",
|
|
"│ TRAINING (ODC Infrastructure) │\n",
|
|
"│ ✅ Dask Gateway (1-10 workers) │\n",
|
|
"│ ✅ Planetary Computer STAC API │\n",
|
|
"│ ✅ S3 access configured │\n",
|
|
"│ → Model: .joblib │\n",
|
|
"└─────────────────────────────────────┘\n",
|
|
" ↓\n",
|
|
"┌─────────────────────────────────────┐\n",
|
|
"│ PREDICTION (API Server) │\n",
|
|
"│ ✅ Planetary Computer (public) │\n",
|
|
"│ ✅ Same preprocessing pipeline │\n",
|
|
"│ → GeoTIFF output │\n",
|
|
"└─────────────────────────────────────┘\n",
|
|
"```\n",
|
|
"\n",
|
|
"---\n"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "983478ae-8c91-456d-b4e4-aa5c92286e72",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": []
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"id": "135c5a1d-f97a-423a-9dc4-46bda170c86e",
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": []
|
|
}
|
|
],
|
|
"metadata": {
|
|
"kernelspec": {
|
|
"display_name": "Python 3 (ipykernel)",
|
|
"language": "python",
|
|
"name": "python3"
|
|
},
|
|
"language_info": {
|
|
"codemirror_mode": {
|
|
"name": "ipython",
|
|
"version": 3
|
|
},
|
|
"file_extension": ".py",
|
|
"mimetype": "text/x-python",
|
|
"name": "python",
|
|
"nbconvert_exporter": "python",
|
|
"pygments_lexer": "ipython3",
|
|
"version": "3.12.3"
|
|
}
|
|
},
|
|
"nbformat": 4,
|
|
"nbformat_minor": 5
|
|
}
|