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remote-sensing/train_files/01.train_DecisionTree_PlanetaryComputer.ipynb
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{
"cells": [
{
"cell_type": "markdown",
"id": "b1dab7f7",
"metadata": {},
"source": [
"# 🌍 Decision Tree Land Classification - Planetary Computer\n",
"\n",
"## 📌 Notebook này có thể chạy trên:\n",
"- ✅ **Local machine** (không cần ODC database)\n",
"- ✅ **Server ODC/JupyterHub** (có ODC database)\n",
"\n",
"## 🎯 Nguồn dữ liệu:\n",
"**Microsoft Planetary Computer STAC API**\n",
"- Sentinel-2 L2A (optical)\n",
"- Sentinel-1 RTC (SAR)\n",
"\n",
"## 🔄 Workflow:\n",
"1. Load data từ Planetary Computer (STAC)\n",
"2. Preprocessing (cloud mask, NDVI, resampling)\n",
"3. Train Decision Tree model\n",
"4. Evaluate & save model\n",
"\n",
"---"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "df9820b8",
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"%matplotlib inline\n",
"\n",
"import sys\n",
"import os\n",
"sys.path.insert(0, '/media/x79/2A7D-FAA0/remote-sensing')\n",
"\n",
"# Import module load dữ liệu không cần ODC database\n",
"import importlib\n",
"import load_data_no_odc\n",
"importlib.reload(load_data_no_odc)\n",
"\n",
"from load_data_no_odc import (\n",
" load_and_process_s2,\n",
" load_and_process_s1,\n",
" load_sentinel2_stac,\n",
" load_sentinel1_stac,\n",
" mask_clean_s2,\n",
" calculate_ndvi,\n",
" fill_nan_temporal,\n",
" resample_monthly\n",
")\n",
"\n",
"# Standard imports\n",
"import numpy as np\n",
"import pandas as pd\n",
"import xarray as xr\n",
"import matplotlib.pyplot as plt\n",
"import seaborn as sns\n",
"sns.set_style('whitegrid')\n",
"\n",
"# ML imports\n",
"from sklearn.tree import DecisionTreeClassifier\n",
"from sklearn.model_selection import train_test_split\n",
"from sklearn.metrics import classification_report, confusion_matrix, accuracy_score\n",
"import joblib\n",
"import json\n",
"from datetime import datetime\n",
"\n",
"# Dask for parallel processing\n",
"from dask.distributed import Client, LocalCluster\n",
"\n",
"print(\"✅ All modules loaded successfully!\")\n",
"print(\"📡 Data source: Microsoft Planetary Computer\")\n",
"print(\"💻 Environment: Local or Remote compatible\")"
]
},
{
"cell_type": "markdown",
"id": "53397b2f",
"metadata": {},
"source": [
"## 🚀 Step 1: Initialize Dask Cluster\n",
"\n",
"Khởi tạo Dask local cluster để xử lý song song"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "3c4d6779",
"metadata": {},
"outputs": [],
"source": [
"# Khởi tạo Dask LocalCluster\n",
"print(\"🚀 Initializing Dask LocalCluster...\")\n",
"\n",
"cluster = LocalCluster(\n",
" n_workers=4,\n",
" threads_per_worker=1,\n",
" memory_limit='4GB'\n",
")\n",
"client = Client(cluster)\n",
"\n",
"print(f\"✅ Dask cluster ready!\")\n",
"print(f\" Workers: {len(cluster.workers)}\")\n",
"print(f\" Dashboard: {client.dashboard_link}\")\n",
"print(\"=\" * 70)"
]
},
{
"cell_type": "markdown",
"id": "28bc5035",
"metadata": {},
"source": [
"## 📍 Step 2: Define Area of Interest (AOI)\n",
"\n",
"Định nghĩa vùng nghiên cứu và khoảng thời gian"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "15a5291c",
"metadata": {},
"outputs": [],
"source": [
"# Cấu hình vùng và thời gian\n",
"date_range = (\"2022-09-01\", \"2023-10-01\")\n",
"\n",
"# Bounding box: (lon_min, lat_min, lon_max, lat_max)\n",
"bbox = (105.5, 9.2, 106.4, 10.0) # Khu vực Mekong Delta\n",
"\n",
"print(\"📍 Area of Interest:\")\n",
"print(f\" Bbox: {bbox}\")\n",
"print(f\" Lon range: {bbox[0]} to {bbox[2]}\")\n",
"print(f\" Lat range: {bbox[1]} to {bbox[3]}\")\n",
"print(f\" Date range: {date_range[0]} to {date_range[1]}\")\n",
"print(\"=\" * 70)"
]
},
{
"cell_type": "markdown",
"id": "422e498e",
"metadata": {},
"source": [
"## 📥 Step 3: Load Sentinel-2 Data\n",
"\n",
"Load dữ liệu Sentinel-2 L2A từ Planetary Computer"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "611cd1c2",
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"\n",
"print(\"📥 Loading Sentinel-2 data from Planetary Computer...\")\n",
"print(\"-\" * 70)\n",
"\n",
"# Load và xử lý Sentinel-2: cloud mask + NDVI + monthly resampling\n",
"data_sen2_monthly = load_and_process_s2(\n",
" bbox=bbox,\n",
" date_range=date_range,\n",
" apply_cloud_mask=True,\n",
" calculate_indices=True\n",
")\n",
"\n",
"if data_sen2_monthly is not None:\n",
" print(f\"\\n✅ Sentinel-2 monthly data loaded!\")\n",
" print(f\" Dimensions: {dict(data_sen2_monthly.dims)}\")\n",
" print(f\" Variables: {list(data_sen2_monthly.data_vars)}\")\n",
" print(f\" Time steps: {len(data_sen2_monthly.time)}\")\n",
" \n",
" # Compute to load into memory\n",
" data_sen2_monthly = data_sen2_monthly.compute()\n",
" print(f\" ✓ Data computed and loaded into memory\")\n",
"else:\n",
" print(\"❌ Failed to load Sentinel-2 data\")"
]
},
{
"cell_type": "markdown",
"id": "79ef9736",
"metadata": {},
"source": [
"## 📥 Step 4: Load Sentinel-1 Data\n",
"\n",
"Load dữ liệu Sentinel-1 RTC (SAR) từ Planetary Computer"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "3bda3dc0",
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"\n",
"print(\"📥 Loading Sentinel-1 data from Planetary Computer...\")\n",
"print(\"-\" * 70)\n",
"\n",
"# Load và xử lý Sentinel-1: monthly resampling\n",
"data_sen1_monthly = load_and_process_s1(\n",
" bbox=bbox,\n",
" date_range=date_range\n",
")\n",
"\n",
"if data_sen1_monthly is not None:\n",
" print(f\"\\n✅ Sentinel-1 monthly data loaded!\")\n",
" print(f\" Dimensions: {dict(data_sen1_monthly.dims)}\")\n",
" print(f\" Variables: {list(data_sen1_monthly.data_vars)}\")\n",
" print(f\" Time steps: {len(data_sen1_monthly.time)}\")\n",
" \n",
" # Compute to load into memory\n",
" data_sen1_monthly = data_sen1_monthly.compute()\n",
" print(f\" ✓ Data computed and loaded into memory\")\n",
"else:\n",
" print(\"❌ Failed to load Sentinel-1 data\")"
]
},
{
"cell_type": "markdown",
"id": "de80d48d",
"metadata": {},
"source": [
"## 🎯 Step 5: Load Training Data\n",
"\n",
"Load dữ liệu mẫu huấn luyện (training samples)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "70925d09",
"metadata": {},
"outputs": [],
"source": [
"from load_data_no_odc import load_train_data\n",
"\n",
"# Ánh xạ nhãn lớp đất\n",
"label_mapping = {\n",
" \"Lua tom\": 0,\n",
" \"Lua\": 1,\n",
" \"CHN\": 2,\n",
" \"CLN\": 3,\n",
" \"TS\": 4,\n",
" \"Song\": 5,\n",
" \"Dat xay dung\": 6,\n",
" \"Rung\": 7,\n",
"}\n",
"\n",
"print(\"🎯 Label mapping:\")\n",
"for label, idx in label_mapping.items():\n",
" print(f\" {idx}: {label}\")\n",
"\n",
"# Load training data from AWS shapefile\n",
"train_path = \"train/ST_training_data_updated_1130points_new.shp\"\n",
"\n",
"print(f\"\\n📂 Loading training data from: {train_path}\")\n",
"train_data = load_train_data(train_path, label_mapping)\n",
"\n",
"if train_data is not None:\n",
" print(f\"\\n✅ Training data loaded successfully!\")\n",
" print(f\" Total points: {len(train_data)}\")\n",
" print(f\" CRS: {train_data.crs}\")\n",
"else:\n",
" print(\"❌ Failed to load training data\")\n"
]
},
{
"cell_type": "markdown",
"id": "fed9a8f1",
"metadata": {},
"source": [
"## 🔧 Step 6: Extract Features\n",
"\n",
"Trích xuất features từ Sentinel-1 và Sentinel-2 tại các điểm mẫu"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "62c41cd0",
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"from load_data_no_odc import extract_features_at_points\n",
"\n",
"print(\"🔧 Extracting features from satellite data...\")\n",
"print(\"-\" * 70)\n",
"\n",
"if train_data is not None and \\\n",
" data_sen2_monthly is not None and \\\n",
" data_sen1_monthly is not None:\n",
" \n",
" # Extract features at training point locations\n",
" X, y = extract_features_at_points(\n",
" train_data, \n",
" data_sen2_monthly, \n",
" data_sen1_monthly\n",
" )\n",
" \n",
" print(f\"\\n✅ Feature extraction complete!\")\n",
" print(f\" Total samples: {len(X)}\")\n",
" print(f\" Feature dimension: {X.shape[1]}\")\n",
" print(f\" Classes: {sorted(set(y.tolist()))}\")\n",
" print(f\" Class distribution:\")\n",
" \n",
" import pandas as pd\n",
" class_counts = pd.Series(y).value_counts().sort_index()\n",
" for class_id, count in class_counts.items():\n",
" class_name = [k for k, v in label_mapping.items() if v == class_id][0]\n",
" print(f\" {class_id} ({class_name}): {count} samples ({count/len(y)*100:.1f}%)\")\n",
" \n",
"else:\n",
" print(\"❌ Missing data: Please check training data or satellite data\")\n",
" print(f\" train_data: {'✓' if train_data is not None else '✗'}\")\n",
" print(f\" data_sen2_monthly: {'✓' if data_sen2_monthly is not None else '✗'}\")\n",
" print(f\" data_sen1_monthly: {'✓' if data_sen1_monthly is not None else '✗'}\")\n"
]
},
{
"cell_type": "markdown",
"id": "f7cd0ca2",
"metadata": {},
"source": [
"## 📊 Step 7: Split Data\n",
"\n",
"Chia dữ liệu thành train/val/test sets"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "523e1249",
"metadata": {},
"outputs": [],
"source": [
"from load_data_no_odc import split_train_data\n",
"\n",
"if 'X' in locals() and 'y' in locals():\n",
" # Split data into train/val/test sets\n",
" X_train, X_val, X_test, y_train, y_val, y_test = split_train_data(\n",
" X, y, \n",
" test_size=0.2, \n",
" val_size=0.1, \n",
" random_state=42\n",
" )\n",
" \n",
" # Combine train + val for final model training\n",
" X_fit = np.concatenate([X_train, X_val], axis=0)\n",
" y_fit = np.concatenate([y_train, y_val], axis=0)\n",
" \n",
" print(f\"\\n✅ Final training set:\")\n",
" print(f\" X_fit shape: {X_fit.shape}\")\n",
" print(f\" y_fit shape: {y_fit.shape}\")\n",
" print(f\"\\n X_test shape: {X_test.shape}\")\n",
" print(f\" y_test shape: {y_test.shape}\")\n",
" \n",
"else:\n",
" print(\"❌ Features not extracted yet. Please run Step 6 first.\")\n"
]
},
{
"cell_type": "markdown",
"id": "a469500c",
"metadata": {},
"source": [
"## 🌲 Step 8: Train Decision Tree Model\n",
"\n",
"Huấn luyện mô hình Decision Tree"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "445c2d92",
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"from sklearn.tree import DecisionTreeClassifier\n",
"\n",
"if 'X_fit' in locals() and 'y_fit' in locals():\n",
" \n",
" print(\"🚀 Training Decision Tree model...\")\n",
" print(\"-\" * 70)\n",
" \n",
" # Train Decision Tree with tuned hyperparameters\n",
" model = DecisionTreeClassifier(\n",
" max_depth=30,\n",
" min_samples_leaf=2,\n",
" min_samples_split=5,\n",
" class_weight=\"balanced\",\n",
" random_state=42,\n",
" )\n",
" \n",
" model.fit(X_fit, y_fit)\n",
" \n",
" # Evaluate on validation set\n",
" val_acc = model.score(X_val, y_val)\n",
" \n",
" print(f\"\\n✅ Training complete!\")\n",
" print(f\" Model: Decision Tree\")\n",
" print(f\" Tree depth: {model.get_depth()}\")\n",
" print(f\" Number of leaves: {model.get_n_leaves()}\")\n",
" print(f\" Training samples: {len(X_fit)}\")\n",
" print(f\" Validation accuracy: {val_acc:.4f} ({val_acc*100:.2f}%)\")\n",
" \n",
"else:\n",
" print(\"❌ Data not ready. Please run Step 7 first.\")\n"
]
},
{
"cell_type": "markdown",
"id": "7c1e681e",
"metadata": {},
"source": [
"## 📈 Step 9: Hyperparameter Analysis\n",
"\n",
"Phân tích độ sâu tối ưu (max_depth) cho Decision Tree"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "d13274e4",
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"import matplotlib.pyplot as plt\n",
"\n",
"if 'X_fit' in locals() and 'X_val' in locals():\n",
" \n",
" DEPTH_RANGE = list(range(1, 51))\n",
" \n",
" train_accs = []\n",
" val_accs = []\n",
" \n",
" print(\"🔍 Analyzing optimal max_depth for Decision Tree...\")\n",
" print(\"-\" * 70)\n",
" print(\"Testing depths from 1 to 50...\")\n",
" \n",
" for d in DEPTH_RANGE:\n",
" m = DecisionTreeClassifier(\n",
" min_samples_leaf=2,\n",
" min_samples_split=5,\n",
" class_weight=\"balanced\",\n",
" random_state=42,\n",
" max_depth=d,\n",
" )\n",
" m.fit(X_fit, y_fit)\n",
" train_accs.append(m.score(X_fit, y_fit))\n",
" val_accs.append(m.score(X_val, y_val))\n",
" \n",
" if d % 10 == 0:\n",
" print(f\" Depth {d:2d}: train={train_accs[-1]:.4f}, val={val_accs[-1]:.4f}\")\n",
" \n",
" train_accs = np.array(train_accs)\n",
" val_accs = np.array(val_accs)\n",
" \n",
" best_depth = DEPTH_RANGE[np.argmax(val_accs)]\n",
" best_val_acc = np.max(val_accs)\n",
" \n",
" print(f\"\\n✅ Optimal max_depth: {best_depth}\")\n",
" print(f\" Best validation accuracy: {best_val_acc:.4f} ({best_val_acc*100:.2f}%)\")\n",
" \n",
" # Plot convergence analysis\n",
" fig, ax = plt.subplots(1, 1, figsize=(12, 5))\n",
" ax.plot(DEPTH_RANGE, train_accs, 'b-o', markersize=3, label='Train Accuracy')\n",
" ax.plot(DEPTH_RANGE, val_accs, 'g-o', markersize=3, label='Validation Accuracy')\n",
" ax.axvline(x=best_depth, color='red', linestyle='--', linewidth=2, \n",
" label=f'Best Depth = {best_depth}')\n",
" ax.set_xlabel('max_depth', fontsize=12)\n",
" ax.set_ylabel('Accuracy', fontsize=12)\n",
" ax.set_title('Decision Tree: Training vs Validation Accuracy', fontsize=14, fontweight='bold')\n",
" ax.legend(fontsize=10)\n",
" ax.grid(True, alpha=0.3)\n",
" plt.tight_layout()\n",
" plt.show()\n",
" \n",
"else:\n",
" print(\"❌ Data not ready. Please run Step 7 first.\")\n"
]
},
{
"cell_type": "markdown",
"id": "b551cdb4",
"metadata": {},
"source": [
"## 📊 Step 10: Evaluate Model\n",
"\n",
"Đánh giá mô hình trên tập test"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "bc3d6b9a",
"metadata": {},
"outputs": [],
"source": [
"from sklearn.metrics import accuracy_score, classification_report, confusion_matrix\n",
"import seaborn as sns\n",
"\n",
"if 'model' in locals() and 'X_test' in locals():\n",
" \n",
" print(\"📊 Evaluating model on test set...\")\n",
" print(\"-\" * 70)\n",
" \n",
" # Make predictions\n",
" y_pred = model.predict(X_test)\n",
" acc = accuracy_score(y_test, y_pred)\n",
" \n",
" print(f\"\\n🎯 Test Accuracy: {acc:.4f} ({acc*100:.2f}%)\\n\")\n",
" print(\"📋 Classification Report:\")\n",
" print(classification_report(y_test, y_pred, digits=4))\n",
" \n",
" # Confusion Matrix\n",
" class_names = list(label_mapping.keys())\n",
" cm = confusion_matrix(y_test, y_pred)\n",
" \n",
" plt.figure(figsize=(10, 8))\n",
" sns.heatmap(cm, annot=True, fmt='d', cmap='Greens',\n",
" xticklabels=class_names, yticklabels=class_names,\n",
" cbar_kws={'label': 'Count'})\n",
" plt.xlabel('Predicted Label', fontsize=12)\n",
" plt.ylabel('True Label', fontsize=12)\n",
" plt.title('Confusion Matrix — Decision Tree (Test Set)', fontsize=14, fontweight='bold')\n",
" plt.tight_layout()\n",
" plt.show()\n",
" \n",
"else:\n",
" print(\"❌ Model not trained yet. Please run Step 8 first.\")\n"
]
},
{
"cell_type": "markdown",
"id": "44d226fc",
"metadata": {},
"source": [
"## 💾 Step 11: Save Model\n",
"\n",
"Lưu mô hình và metadata"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "044eefc4",
"metadata": {},
"outputs": [],
"source": [
"import joblib\n",
"import json\n",
"from datetime import datetime\n",
"\n",
"if 'model' in locals() and 'acc' in locals():\n",
" \n",
" print(\"💾 Saving model and metadata...\")\n",
" print(\"-\" * 70)\n",
" \n",
" # Save model\n",
" model_path = \"model_decision_tree_planetary_computer.joblib\"\n",
" joblib.dump(model, model_path)\n",
" print(f\"✅ Model saved → {model_path}\")\n",
" \n",
" # Create metadata\n",
" info = {\n",
" \"model_type\": \"DecisionTree\",\n",
" \"data_source\": \"Microsoft Planetary Computer\",\n",
" \"training_data\": train_path,\n",
" \"max_depth\": int(model.get_depth()),\n",
" \"n_leaves\": int(model.get_n_leaves()),\n",
" \"n_features\": int(X_fit.shape[1]),\n",
" \"label_mapping\": label_mapping,\n",
" \"test_accuracy\": float(acc),\n",
" \"train_samples\": int(len(X_fit)),\n",
" \"val_samples\": int(len(X_val)),\n",
" \"test_samples\": int(len(X_test)),\n",
" \"bbox\": bbox,\n",
" \"date_range\": list(date_range),\n",
" \"saved_at\": datetime.now().isoformat(),\n",
" \"hyperparameters\": {\n",
" \"max_depth\": 30,\n",
" \"min_samples_leaf\": 2,\n",
" \"min_samples_split\": 5,\n",
" \"class_weight\": \"balanced\",\n",
" \"random_state\": 42\n",
" }\n",
" }\n",
" \n",
" # Save metadata\n",
" info_path = \"model_decision_tree_planetary_computer_info.json\"\n",
" with open(info_path, \"w\") as f:\n",
" json.dump(info, f, indent=2, ensure_ascii=False)\n",
" \n",
" print(f\"✅ Metadata saved → {info_path}\")\n",
" print(\"\\n📋 Model Info:\")\n",
" print(json.dumps(info, indent=2, ensure_ascii=False))\n",
" \n",
"else:\n",
" print(\"❌ Model not trained yet or evaluation not complete.\")\n"
]
},
{
"cell_type": "markdown",
"id": "18c95152",
"metadata": {},
"source": [
"## 🧹 Step 12: Cleanup\n",
"\n",
"Đóng Dask cluster"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "20445068",
"metadata": {},
"outputs": [],
"source": [
"# Close Dask cluster\n",
"try:\n",
" client.close()\n",
" cluster.close()\n",
" print(\"✅ Dask cluster closed.\")\n",
"except Exception as e:\n",
" print(f\"⚠ Error closing cluster: {e}\")"
]
},
{
"cell_type": "markdown",
"id": "046bf0f9",
"metadata": {},
"source": [
"---\n",
"\n",
"## ✅ Summary\n",
"\n",
"### Notebook này:\n",
"- ✅ Load dữ liệu từ **Microsoft Planetary Computer**\n",
"- ✅ Không cần **ODC Database**\n",
"- ✅ Có thể chạy trên **local machine** hoặc **server ODC**\n",
"- ✅ Tương thích 100% với dữ liệu ODC\n",
"\n",
"### Workflow train/predict:\n",
"1. **Train trên server ODC**: Chạy notebook này với training data đầy đủ\n",
"2. **Save model**: Export `.joblib` file\n",
"3. **Predict trên local**: Load model và sử dụng cùng `load_data_no_odc.py` để load dữ liệu mới\n",
"\n",
"### Next steps:\n",
"1. Cập nhật `train_path` với đường dẫn training data thực tế\n",
"2. Uncomment các TODO cells\n",
"3. Run notebook để train model\n",
"4. Test prediction trên local machine\n",
"\n",
"---"
]
}
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