737 lines
106 KiB
Plaintext
737 lines
106 KiB
Plaintext
{
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fa-info-circle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]}]}]},{\"type\":\"model\",\"name\":\"Notification\",\"properties\":[{\"name\":\"background\",\"kind\":\"Any\",\"default\":null},{\"name\":\"duration\",\"kind\":\"Any\",\"default\":3000},{\"name\":\"icon\",\"kind\":\"Any\",\"default\":null},{\"name\":\"message\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"notification_type\",\"kind\":\"Any\",\"default\":null},{\"name\":\"_destroyed\",\"kind\":\"Any\",\"default\":false}]},{\"type\":\"model\",\"name\":\"TemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"BootstrapTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"TemplateEditor1\",\"properties\":[{\"name\":\"layout\",\"kind\":\"Any\",\"default\":[]}]},{\"type\":\"model\",\"name\":\"MaterialTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"ReactiveESM1\"},{\"type\":\"model\",\"name\":\"JSComponent1\"},{\"type\":\"model\",\"name\":\"ReactComponent1\"},{\"type\":\"model\",\"name\":\"AnyWidgetComponent1\"},{\"type\":\"model\",\"name\":\"request_value1\",\"properties\":[{\"name\":\"fill\",\"kind\":\"Any\",\"default\":\"none\"},{\"name\":\"_synced\",\"kind\":\"Any\",\"default\":null},{\"name\":\"_request_sync\",\"kind\":\"Any\",\"default\":0}]}]}};\n",
|
||
" var render_items = [{\"docid\":\"07c259d4-2a9a-4a0e-bd87-21144d3ecf4a\",\"roots\":{\"p1002\":\"fcccf349-5ecc-4ba5-8aa2-38f12a0e6de7\"},\"root_ids\":[\"p1002\"]}];\n",
|
||
" var docs = Object.values(docs_json)\n",
|
||
" if (!docs) {\n",
|
||
" return\n",
|
||
" }\n",
|
||
" const py_version = docs[0].version.replace('rc', '-rc.').replace('.dev', '-dev.')\n",
|
||
" async function embed_document(root) {\n",
|
||
" var Bokeh = get_bokeh(root)\n",
|
||
" await Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
|
||
" for (const render_item of render_items) {\n",
|
||
" for (const root_id of render_item.root_ids) {\n",
|
||
"\tconst id_el = document.getElementById(root_id)\n",
|
||
"\tif (id_el.children.length && id_el.children[0].hasAttribute('data-root-id')) {\n",
|
||
"\t const root_el = id_el.children[0]\n",
|
||
"\t root_el.id = root_el.id + '-rendered'\n",
|
||
"\t for (const child of root_el.children) {\n",
|
||
" // Ensure JupyterLab does not capture keyboard shortcuts\n",
|
||
" // see: https://jupyterlab.readthedocs.io/en/4.1.x/extension/notebook.html#keyboard-interaction-model\n",
|
||
"\t child.setAttribute('data-lm-suppress-shortcuts', 'true')\n",
|
||
"\t }\n",
|
||
"\t}\n",
|
||
" }\n",
|
||
" }\n",
|
||
" }\n",
|
||
" function get_bokeh(root) {\n",
|
||
" if (root.Bokeh === undefined) {\n",
|
||
" return null\n",
|
||
" } else if (root.Bokeh.version !== py_version) {\n",
|
||
" if (root.Bokeh.versions === undefined || !root.Bokeh.versions.has(py_version)) {\n",
|
||
"\treturn null\n",
|
||
" }\n",
|
||
" return root.Bokeh.versions.get(py_version);\n",
|
||
" } else if (root.Bokeh.version === py_version) {\n",
|
||
" return root.Bokeh\n",
|
||
" }\n",
|
||
" return null\n",
|
||
" }\n",
|
||
" function is_loaded(root) {\n",
|
||
" var Bokeh = get_bokeh(root)\n",
|
||
" return (Bokeh != null && Bokeh.Panel !== undefined)\n",
|
||
" }\n",
|
||
" if (is_loaded(root)) {\n",
|
||
" embed_document(root);\n",
|
||
" } else {\n",
|
||
" var attempts = 0;\n",
|
||
" var timer = setInterval(function(root) {\n",
|
||
" if (is_loaded(root)) {\n",
|
||
" clearInterval(timer);\n",
|
||
" embed_document(root);\n",
|
||
" } else if (document.readyState == \"complete\") {\n",
|
||
" attempts++;\n",
|
||
" if (attempts > 200) {\n",
|
||
" clearInterval(timer);\n",
|
||
"\t var Bokeh = get_bokeh(root)\n",
|
||
"\t if (Bokeh == null || Bokeh.Panel == null) {\n",
|
||
" console.warn(\"Panel: ERROR: Unable to run Panel code because Bokeh or Panel library is missing\");\n",
|
||
"\t } else {\n",
|
||
"\t console.warn(\"Panel: WARNING: Attempting to render but not all required libraries could be resolved.\")\n",
|
||
"\t embed_document(root)\n",
|
||
"\t }\n",
|
||
" }\n",
|
||
" }\n",
|
||
" }, 25, root)\n",
|
||
" }\n",
|
||
"})(window);</script>"
|
||
]
|
||
},
|
||
"metadata": {
|
||
"application/vnd.holoviews_exec.v0+json": {
|
||
"id": "p1002"
|
||
}
|
||
},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"data": {
|
||
"text/html": [
|
||
"<script type=\"esms-options\">{\"shimMode\": true}</script><style>*[data-root-id],\n",
|
||
"*[data-root-id] > * {\n",
|
||
" box-sizing: border-box;\n",
|
||
" font-family: var(--jp-ui-font-family);\n",
|
||
" font-size: var(--jp-ui-font-size1);\n",
|
||
" color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
|
||
"}\n",
|
||
"\n",
|
||
"/* Override VSCode background color */\n",
|
||
".cell-output-ipywidget-background:has(\n",
|
||
" > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
|
||
" ),\n",
|
||
".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
|
||
" background-color: transparent !important;\n",
|
||
"}\n",
|
||
"</style>"
|
||
]
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"data": {
|
||
"application/javascript": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const py_version = '3.6.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; i < links.length; i++) {\n const link = links[i]\n if (link.href != null) {\n existing_stylesheets.push(link.href)\n }\n }\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const escaped = encodeURI(url)\n if (existing_stylesheets.indexOf(escaped) !== -1) {\n on_load()\n continue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } var existing_scripts = []\n const scripts = document.getElementsByTagName('script')\n for (let i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n existing_scripts.push(script.src)\n }\n }\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (let i = 0; i < js_modules.length; i++) {\n const url = js_modules[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n const url = js_exports[name];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.holoviz.org/panel/1.5.3/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n const js_modules = [];\n const js_exports = {};\n const css_urls = [];\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (let i = 0; i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n var NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh.versions.set(NewBokeh.version, NewBokeh)\n }\n root.Bokeh = Bokeh;\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));",
|
||
"application/vnd.holoviews_load.v0+json": ""
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"data": {
|
||
"application/javascript": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = 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"output_type": "display_data"
|
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},
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{
|
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"data": {
|
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"text/html": [
|
||
"<script type=\"esms-options\">{\"shimMode\": true}</script><style>*[data-root-id],\n",
|
||
"*[data-root-id] > * {\n",
|
||
" box-sizing: border-box;\n",
|
||
" font-family: var(--jp-ui-font-family);\n",
|
||
" font-size: var(--jp-ui-font-size1);\n",
|
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" color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
|
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"}\n",
|
||
"\n",
|
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"/* Override VSCode background color */\n",
|
||
".cell-output-ipywidget-background:has(\n",
|
||
" > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
|
||
" ),\n",
|
||
".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
|
||
" background-color: transparent !important;\n",
|
||
"}\n",
|
||
"</style>"
|
||
]
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
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{
|
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"data": {
|
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"application/javascript": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const py_version = '3.6.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; i < links.length; i++) {\n const link = links[i]\n if (link.href != null) {\n existing_stylesheets.push(link.href)\n }\n }\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const escaped = encodeURI(url)\n if (existing_stylesheets.indexOf(escaped) !== -1) {\n on_load()\n continue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } var existing_scripts = []\n const scripts = document.getElementsByTagName('script')\n for (let i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n existing_scripts.push(script.src)\n }\n }\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (let i = 0; i < js_modules.length; i++) {\n const url = js_modules[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n const url = js_exports[name];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.holoviz.org/panel/1.5.3/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n const js_modules = [];\n const js_exports = {};\n const css_urls = [];\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (let i = 0; i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n var NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh.versions.set(NewBokeh.version, NewBokeh)\n }\n root.Bokeh = Bokeh;\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));",
|
||
"application/vnd.holoviews_load.v0+json": ""
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"data": {
|
||
"application/javascript": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n",
|
||
"application/vnd.holoviews_load.v0+json": ""
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"name": "stdout",
|
||
"output_type": "stream",
|
||
"text": [
|
||
"CPU times: user 18.9 s, sys: 3.43 s, total: 22.4 s\n",
|
||
"Wall time: 13.8 s\n"
|
||
]
|
||
}
|
||
],
|
||
"source": [
|
||
"%%time\n",
|
||
"%matplotlib inline\n",
|
||
"\n",
|
||
"import importlib\n",
|
||
"import new_import_ODC \n",
|
||
"\n",
|
||
"importlib.reload(new_import_ODC)\n",
|
||
"\n",
|
||
"from new_import_ODC import *"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": 2,
|
||
"id": "b794d005",
|
||
"metadata": {},
|
||
"outputs": [
|
||
{
|
||
"name": "stdout",
|
||
"output_type": "stream",
|
||
"text": [
|
||
"Starting new cluster\n",
|
||
"✅ Dask + Datacube + S3 sẵn sàng\n"
|
||
]
|
||
}
|
||
],
|
||
"source": [
|
||
"# Khởi tạo Dask + Datacube + S3\n",
|
||
"# Cấu hình Daskgateway\n",
|
||
"cluster, client = notebook_utils.initialize_dask(use_gateway=True, workers=(1, 10))\n",
|
||
"# Khai báo 1 Datacube là dc\n",
|
||
"dc = datacube.Datacube()\n",
|
||
"configure_s3_access(aws_unsigned=True)\n",
|
||
"print(\"✅ Dask + Datacube + S3 sẵn sàng\")\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": 3,
|
||
"id": "5bc42a3c",
|
||
"metadata": {},
|
||
"outputs": [
|
||
{
|
||
"name": "stdout",
|
||
"output_type": "stream",
|
||
"text": [
|
||
"Most common native CRS: EPSG:32648\n",
|
||
"No datasets require offset correction\n",
|
||
"The valid_data_mask and scale (no offset) have been applied to the reflectance bands\n",
|
||
"✅ Sentinel-2 raw: FrozenMappingWarningOnValuesAccess({'time': 151, 'y': 8874, 'x': 9902})\n"
|
||
]
|
||
}
|
||
],
|
||
"source": [
|
||
"# Cấu hình vùng và thời gian\n",
|
||
"date_range = (\"2022-09-01\", \"2023-10-01\")\n",
|
||
"longtitude_range = (105.5, 106.4)\n",
|
||
"latitude_range = (9.2, 10.0)\n",
|
||
"\n",
|
||
"# Tải dữ liệu Sentinel-2\n",
|
||
"data_sen2 = load_data(\n",
|
||
" dc=dc,\n",
|
||
" date_range=date_range,\n",
|
||
" longtitude_range=longtitude_range,\n",
|
||
" latitude_range=latitude_range,\n",
|
||
")\n",
|
||
"print(f\"✅ Sentinel-2 raw: {data_sen2.dims}\")\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "0ef51e7d",
|
||
"metadata": {},
|
||
"outputs": [
|
||
{
|
||
"data": {
|
||
"text/html": [
|
||
"<div>\n",
|
||
"<style scoped>\n",
|
||
" .dataframe tbody tr th:only-of-type {\n",
|
||
" vertical-align: middle;\n",
|
||
" }\n",
|
||
"\n",
|
||
" .dataframe tbody tr th {\n",
|
||
" vertical-align: top;\n",
|
||
" }\n",
|
||
"\n",
|
||
" .dataframe thead th {\n",
|
||
" text-align: right;\n",
|
||
" }\n",
|
||
"</style>\n",
|
||
"<table border=\"1\" class=\"dataframe\">\n",
|
||
" <thead>\n",
|
||
" <tr style=\"text-align: right;\">\n",
|
||
" <th></th>\n",
|
||
" <th>bits</th>\n",
|
||
" <th>values</th>\n",
|
||
" <th>description</th>\n",
|
||
" </tr>\n",
|
||
" </thead>\n",
|
||
" <tbody>\n",
|
||
" <tr>\n",
|
||
" <th>qa</th>\n",
|
||
" <td>[0, 1, 2, 3, 4, 5, 6, 7]</td>\n",
|
||
" <td>{'0': 'no data', '1': 'saturated or defective'...</td>\n",
|
||
" <td>Sen2Cor Scene Classification</td>\n",
|
||
" </tr>\n",
|
||
" </tbody>\n",
|
||
"</table>\n",
|
||
"</div>"
|
||
],
|
||
"text/plain": [
|
||
" bits \\\n",
|
||
"qa [0, 1, 2, 3, 4, 5, 6, 7] \n",
|
||
"\n",
|
||
" values \\\n",
|
||
"qa {'0': 'no data', '1': 'saturated or defective'... \n",
|
||
"\n",
|
||
" description \n",
|
||
"qa Sen2Cor Scene Classification "
|
||
]
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"data": {
|
||
"text/plain": [
|
||
"{'0': 'no data',\n",
|
||
" '1': 'saturated or defective',\n",
|
||
" '2': 'dark area pixels',\n",
|
||
" '3': 'cloud shadows',\n",
|
||
" '4': 'vegetation',\n",
|
||
" '5': 'bare soils',\n",
|
||
" '6': 'water',\n",
|
||
" '7': 'unclassified',\n",
|
||
" '8': 'cloud medium probability',\n",
|
||
" '9': 'cloud high probability',\n",
|
||
" '10': 'thin cirrus',\n",
|
||
" '11': 'snow or ice'}"
|
||
]
|
||
},
|
||
"metadata": {},
|
||
"output_type": "display_data"
|
||
},
|
||
{
|
||
"ename": "ValueError",
|
||
"evalue": "No `satellite_mission` was provided. Please specify either 'ls' or 's2' to ensure the \nfunction calculates indices using the correct spectral bands.",
|
||
"output_type": "error",
|
||
"traceback": [
|
||
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
|
||
"\u001b[0;31mValueError\u001b[0m Traceback (most recent call last)",
|
||
"Cell \u001b[0;32mIn[4], line 3\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;66;03m# Tiền xử lý Sentinel-2: cloud mask + NDVI + resampling\u001b[39;00m\n\u001b[1;32m 2\u001b[0m data_clean \u001b[38;5;241m=\u001b[39m mask_clean(data_sen2)\n\u001b[0;32m----> 3\u001b[0m data_ndvi \u001b[38;5;241m=\u001b[39m \u001b[43mcalculate_indices\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata_clean\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mindex\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mNDVI\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 4\u001b[0m data_fill \u001b[38;5;241m=\u001b[39m fill_nan(data_ndvi)\n\u001b[1;32m 5\u001b[0m data_sen2_monthly \u001b[38;5;241m=\u001b[39m data_fill\u001b[38;5;241m.\u001b[39mresample(time\u001b[38;5;241m=\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m1MS\u001b[39m\u001b[38;5;124m\"\u001b[39m)\u001b[38;5;241m.\u001b[39mmean()\u001b[38;5;241m.\u001b[39mcompute()\n",
|
||
"File \u001b[0;32m~/remote-sensing/deafrica_tools/bandindices.py:374\u001b[0m, in \u001b[0;36mcalculate_indices\u001b[0;34m(ds, index, collection, satellite_mission, custom_varname, normalise, drop, deep_copy)\u001b[0m\n\u001b[1;32m 368\u001b[0m \u001b[38;5;66;03m# Rename bands to a consistent format if depending on what satellite mission\u001b[39;00m\n\u001b[1;32m 369\u001b[0m \u001b[38;5;66;03m# is specified in `satellite_mission`. This allows the same index calculations\u001b[39;00m\n\u001b[1;32m 370\u001b[0m \u001b[38;5;66;03m# to be applied to all satellite missions. If no satellite mission was provided,\u001b[39;00m\n\u001b[1;32m 371\u001b[0m \u001b[38;5;66;03m# raise an exception.\u001b[39;00m\n\u001b[1;32m 372\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m satellite_mission \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[0;32m--> 374\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\n\u001b[1;32m 375\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mNo `satellite_mission` was provided. Please specify \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 376\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124meither \u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mls\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m or \u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124ms2\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m to ensure the \u001b[39m\u001b[38;5;130;01m\\n\u001b[39;00m\u001b[38;5;124mfunction \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 377\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mcalculates indices using the correct spectral \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 378\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mbands.\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 379\u001b[0m )\n\u001b[1;32m 381\u001b[0m \u001b[38;5;28;01melif\u001b[39;00m satellite_mission \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mls\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[1;32m 382\u001b[0m sr_max \u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1.0\u001b[39m\n",
|
||
"\u001b[0;31mValueError\u001b[0m: No `satellite_mission` was provided. Please specify either 'ls' or 's2' to ensure the \nfunction calculates indices using the correct spectral bands."
|
||
]
|
||
}
|
||
],
|
||
"source": [
|
||
"# Tiền xử lý Sentinel-2: cloud mask + NDVI + resampling\n",
|
||
"data_clean = mask_clean(data_sen2)\n",
|
||
"data_ndvi = calculate_indices(data_clean, index=\"NDVI\", satellite_mission=\"s2\")\n",
|
||
"data_fill = fill_nan(data_ndvi)\n",
|
||
"data_sen2_monthly = data_fill.resample(time=\"1MS\").mean().compute()\n",
|
||
"print(f\"✅ S2 monthly shape: {data_sen2_monthly.dims}\")"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "0da4f86d",
|
||
"metadata": {},
|
||
"outputs": [],
|
||
"source": [
|
||
"# Tải Sentinel-1 (SAR VV/VH)\n",
|
||
"data_sen1 = load_data_sen1(\n",
|
||
" dc=dc,\n",
|
||
" date_range=date_range,\n",
|
||
" longtitude_range=longtitude_range,\n",
|
||
" latitude_range=latitude_range,\n",
|
||
")\n",
|
||
"data_sen1_monthly = calculate_average(data_sen1, [\"VV\", \"VH\"], resample=\"1MS\").compute()\n",
|
||
"print(f\"✅ S1 monthly shape: {data_sen1_monthly.dims}\")\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "412b3716",
|
||
"metadata": {},
|
||
"outputs": [],
|
||
"source": [
|
||
"import numpy as np\n",
|
||
"\n",
|
||
"# Ánh xạ nhãn lớp đất\n",
|
||
"label_mapping = {\n",
|
||
" \"Lua tom\": \"0\", \"Lua\": \"1\", \"CHN\": \"2\", \"CLN\": \"3\",\n",
|
||
" \"TS\": \"4\", \"Song\": \"5\", \"Dat xay dung\": \"6\", \"Rung\": \"7\",\n",
|
||
"}\n",
|
||
"\n",
|
||
"# Tải và ghép dữ liệu train từ S1 + S2\n",
|
||
"train_data = load_train_data(label_mapping=label_mapping)\n",
|
||
"X, y = get_data_sen1_and_sen2(train_data, data_sen2_monthly, data_sen1_monthly)\n",
|
||
"\n",
|
||
"# Chia tập train / val / test\n",
|
||
"X_train, X_val, X_test, y_train, y_val, y_test = split_train_data(X, y, test_size=0.2, val_size=0.1)\n",
|
||
"\n",
|
||
"X_train_np = np.array(X_train, dtype=np.float32)\n",
|
||
"X_val_np = np.array(X_val, dtype=np.float32)\n",
|
||
"X_test_np = np.array(X_test, dtype=np.float32)\n",
|
||
"y_train_np = np.array(y_train, dtype=np.int64)\n",
|
||
"y_val_np = np.array(y_val, dtype=np.int64)\n",
|
||
"y_test_np = np.array(y_test, dtype=np.int64)\n",
|
||
"\n",
|
||
"# Gộp train + val cho sklearn\n",
|
||
"X_fit = np.concatenate([X_train_np, X_val_np], axis=0)\n",
|
||
"y_fit = np.concatenate([y_train_np, y_val_np], axis=0)\n",
|
||
"\n",
|
||
"print(f\"✅ X_fit: {X_fit.shape} | X_test: {X_test_np.shape}\")\n",
|
||
"print(f\" Classes: {sorted(set(y_fit.tolist()))}\")\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "84a8a1d0",
|
||
"metadata": {},
|
||
"outputs": [],
|
||
"source": [
|
||
"%%time\n",
|
||
"from sklearn.tree import DecisionTreeClassifier\n",
|
||
"\n",
|
||
"# ── Xây dựng và train mô hình Decision Tree ─────────────────────────────────\n",
|
||
"model = DecisionTreeClassifier(\n",
|
||
" max_depth=30,\n",
|
||
" min_samples_leaf=2,\n",
|
||
" min_samples_split=5,\n",
|
||
" class_weight=\"balanced\",\n",
|
||
" random_state=42,\n",
|
||
")\n",
|
||
"\n",
|
||
"print(\"🚀 Training Decision Tree...\")\n",
|
||
"model.fit(X_fit, y_fit)\n",
|
||
"\n",
|
||
"val_acc = model.score(X_val_np, y_val_np)\n",
|
||
"print(f\"✅ Training hoàn tất! Depth: {model.get_depth()} \"\n",
|
||
" f\"Leaves: {model.get_n_leaves()} Val accuracy: {val_acc:.4f}\")\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "8248d748",
|
||
"metadata": {},
|
||
"outputs": [],
|
||
"source": [
|
||
"import matplotlib.pyplot as plt\n",
|
||
"import numpy as np\n",
|
||
"from sklearn.tree import DecisionTreeClassifier\n",
|
||
"\n",
|
||
"# ═══════════════════════════════════════════════════════════════════════════════\n",
|
||
"# PHÂN TÍCH ĐIỂM HỘI TỤ — Decision Tree\n",
|
||
"# Phương pháp: quét max_depth từ 1→50 và theo dõi train/val accuracy\n",
|
||
"# Điểm hội tụ = độ sâu tại đó val_acc đạt cực đại rồi bắt đầu giảm (overfitting)\n",
|
||
"# ═══════════════════════════════════════════════════════════════════════════════\n",
|
||
"DEPTH_RANGE = list(range(1, 51))\n",
|
||
"THRESHOLD = 0.001 # cải thiện val_acc < 0.1% → coi là hội tụ\n",
|
||
"\n",
|
||
"train_accs_d, val_accs_d = [], []\n",
|
||
"print(\"🔍 Phân tích hội tụ theo max_depth ...\")\n",
|
||
"for d in DEPTH_RANGE:\n",
|
||
" m = DecisionTreeClassifier(\n",
|
||
" min_samples_leaf=2, min_samples_split=5,\n",
|
||
" class_weight=\"balanced\", random_state=42, max_depth=d,\n",
|
||
" )\n",
|
||
" m.fit(X_fit, y_fit)\n",
|
||
" train_accs_d.append(m.score(X_fit, y_fit))\n",
|
||
" val_accs_d.append( m.score(X_val_np, y_val_np))\n",
|
||
"\n",
|
||
"train_accs_d = np.array(train_accs_d)\n",
|
||
"val_accs_d = np.array(val_accs_d)\n",
|
||
"improvements = np.diff(val_accs_d)\n",
|
||
"\n",
|
||
"# ── Tìm điểm hội tụ ───────────────────────────────────────────────────────────\n",
|
||
"best_depth = DEPTH_RANGE[int(np.argmax(val_accs_d))]\n",
|
||
"best_val_acc = float(np.max(val_accs_d))\n",
|
||
"\n",
|
||
"# Điểm hội tụ sớm: lần đầu cải thiện < threshold\n",
|
||
"conv_depth = None\n",
|
||
"for i, imp in enumerate(improvements):\n",
|
||
" if abs(imp) < THRESHOLD:\n",
|
||
" conv_depth = DEPTH_RANGE[i + 1]\n",
|
||
" break\n",
|
||
"\n",
|
||
"# Điểm overfit: val_acc bắt đầu giảm so với peak\n",
|
||
"overfit_depth = None\n",
|
||
"peak_idx = int(np.argmax(val_accs_d))\n",
|
||
"for i in range(peak_idx + 1, len(val_accs_d)):\n",
|
||
" if val_accs_d[i] < best_val_acc - 0.005: # giảm > 0.5%\n",
|
||
" overfit_depth = DEPTH_RANGE[i]\n",
|
||
" break\n",
|
||
"\n",
|
||
"# Khoảng cách train-val (generalization gap)\n",
|
||
"gap = train_accs_d - val_accs_d\n",
|
||
"\n",
|
||
"# ── Vẽ đồ thị ─────────────────────────────────────────────────────────────────\n",
|
||
"fig, axes = plt.subplots(1, 3, figsize=(18, 5))\n",
|
||
"\n",
|
||
"# --- Trái: accuracy curves ---\n",
|
||
"axes[0].plot(DEPTH_RANGE, train_accs_d, \"b-o\", markersize=3, label=\"Train\")\n",
|
||
"axes[0].plot(DEPTH_RANGE, val_accs_d, \"g-o\", markersize=3, label=\"Val\")\n",
|
||
"axes[0].axvline(x=best_depth, color=\"red\", linestyle=\"--\", linewidth=1.5,\n",
|
||
" label=f\"Best depth={best_depth} ({best_val_acc*100:.2f}%)\")\n",
|
||
"if conv_depth:\n",
|
||
" axes[0].axvline(x=conv_depth, color=\"orange\", linestyle=\":\", linewidth=1.5,\n",
|
||
" label=f\"Hội tụ depth={conv_depth}\")\n",
|
||
"if overfit_depth:\n",
|
||
" axes[0].axvline(x=overfit_depth, color=\"purple\", linestyle=\"-.\", linewidth=1.5,\n",
|
||
" label=f\"Overfit depth={overfit_depth}\")\n",
|
||
"axes[0].set_xlabel(\"max_depth\")\n",
|
||
"axes[0].set_ylabel(\"Accuracy\")\n",
|
||
"axes[0].set_title(\"Train / Val Accuracy vs max_depth\")\n",
|
||
"axes[0].legend(fontsize=8)\n",
|
||
"axes[0].grid(True, alpha=0.3)\n",
|
||
"\n",
|
||
"# --- Giữa: marginal improvement ---\n",
|
||
"axes[1].bar(DEPTH_RANGE[1:], improvements * 100,\n",
|
||
" color=[\"green\" if v > 0 else \"red\" for v in improvements], alpha=0.7)\n",
|
||
"axes[1].axhline(y=0, color=\"black\", linewidth=0.8)\n",
|
||
"axes[1].axhline(y=THRESHOLD * 100, color=\"orange\", linestyle=\"--\",\n",
|
||
" label=f\"Threshold={THRESHOLD*100:.2f}%\")\n",
|
||
"if conv_depth:\n",
|
||
" axes[1].axvline(x=conv_depth, color=\"orange\", linestyle=\":\", linewidth=1.5,\n",
|
||
" label=f\"Hội tụ depth={conv_depth}\")\n",
|
||
"axes[1].set_xlabel(\"max_depth\")\n",
|
||
"axes[1].set_ylabel(\"ΔVal Accuracy (%)\")\n",
|
||
"axes[1].set_title(\"Marginal Val Improvement per Depth Step\")\n",
|
||
"axes[1].legend(fontsize=8)\n",
|
||
"axes[1].grid(True, alpha=0.3)\n",
|
||
"\n",
|
||
"# --- Phải: generalization gap ---\n",
|
||
"axes[2].fill_between(DEPTH_RANGE, gap * 100, alpha=0.5, color=\"tomato\", label=\"Gap = Train − Val\")\n",
|
||
"axes[2].plot(DEPTH_RANGE, gap * 100, \"r-o\", markersize=3)\n",
|
||
"if best_depth:\n",
|
||
" axes[2].axvline(x=best_depth, color=\"red\", linestyle=\"--\", linewidth=1.5,\n",
|
||
" label=f\"Best depth={best_depth}\")\n",
|
||
"axes[2].set_xlabel(\"max_depth\")\n",
|
||
"axes[2].set_ylabel(\"Gap (%)\")\n",
|
||
"axes[2].set_title(\"Generalization Gap (Overfitting Risk)\")\n",
|
||
"axes[2].legend(fontsize=8)\n",
|
||
"axes[2].grid(True, alpha=0.3)\n",
|
||
"\n",
|
||
"plt.suptitle(\"Decision Tree — Convergence Analysis\", fontsize=13, fontweight=\"bold\")\n",
|
||
"plt.tight_layout()\n",
|
||
"plt.show()\n",
|
||
"\n",
|
||
"# ── Tổng kết ──────────────────────────────────────────────────────────────────\n",
|
||
"print(f\"\\n{'═'*58}\")\n",
|
||
"print(f\" Độ sâu TỐI ƯU (best val acc) : max_depth = {best_depth} ({best_val_acc*100:.4f}%)\")\n",
|
||
"if conv_depth:\n",
|
||
" print(f\" Điểm HỘI TỤ (Δacc < {THRESHOLD*100:.1f}%) : max_depth = {conv_depth}\")\n",
|
||
"if overfit_depth:\n",
|
||
" print(f\" Điểm OVERFIT bắt đầu : max_depth ≥ {overfit_depth}\")\n",
|
||
" print(f\" → Nên dùng max_depth ≤ {best_depth} để tránh overfit\")\n",
|
||
"print(f\"{'═'*58}\")\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "5660e2ec",
|
||
"metadata": {},
|
||
"outputs": [],
|
||
"source": [
|
||
"from sklearn.metrics import classification_report, confusion_matrix, accuracy_score\n",
|
||
"import matplotlib.pyplot as plt\n",
|
||
"import seaborn as sns\n",
|
||
"\n",
|
||
"# ── Đánh giá trên tập test ─────────────────────────────────────────────────────\n",
|
||
"y_pred = model.predict(X_test_np)\n",
|
||
"\n",
|
||
"acc = accuracy_score(y_test_np, y_pred)\n",
|
||
"print(f\"Test Accuracy : {acc:.4f} ({acc*100:.2f}%)\\n\")\n",
|
||
"print(classification_report(y_test_np, y_pred, digits=4))\n",
|
||
"\n",
|
||
"# ── Feature importance ──────────────────────────────────────────────────────────\n",
|
||
"feat_imp = model.feature_importances_\n",
|
||
"idx = feat_imp.argsort()[::-1][:20]\n",
|
||
"plt.figure(figsize=(12, 4))\n",
|
||
"plt.bar(range(len(idx)), feat_imp[idx])\n",
|
||
"plt.xticks(range(len(idx)), idx, rotation=45)\n",
|
||
"plt.title(\"Top-20 Feature Importances\")\n",
|
||
"plt.tight_layout()\n",
|
||
"plt.show()\n",
|
||
"\n",
|
||
"# ── Confusion matrix ────────────────────────────────────────────────────────────\n",
|
||
"class_names = list(label_mapping.keys())\n",
|
||
"cm = confusion_matrix(y_test_np, y_pred)\n",
|
||
"plt.figure(figsize=(9, 7))\n",
|
||
"sns.heatmap(cm, annot=True, fmt=\"d\", cmap=\"Greens\",\n",
|
||
" xticklabels=class_names, yticklabels=class_names)\n",
|
||
"plt.xlabel(\"Predicted\")\n",
|
||
"plt.ylabel(\"Actual\")\n",
|
||
"plt.title(\"Confusion Matrix — Decision Tree\")\n",
|
||
"plt.tight_layout()\n",
|
||
"plt.show()\n"
|
||
]
|
||
},
|
||
{
|
||
"cell_type": "code",
|
||
"execution_count": null,
|
||
"id": "e416c2aa",
|
||
"metadata": {},
|
||
"outputs": [],
|
||
"source": [
|
||
"import joblib, json\n",
|
||
"from datetime import datetime\n",
|
||
"\n",
|
||
"# ── Lưu mô hình ────────────────────────────────────────────────────────────────\n",
|
||
"model_path = \"model_decision_tree_land_use.joblib\"\n",
|
||
"joblib.dump(model, model_path)\n",
|
||
"print(f\"✅ Model saved → {model_path}\")\n",
|
||
"\n",
|
||
"# ── Lưu thông tin mô hình ──────────────────────────────────────────────────────\n",
|
||
"info = {\n",
|
||
" \"model_type\": \"DecisionTree\",\n",
|
||
" \"max_depth\": model.get_depth(),\n",
|
||
" \"n_leaves\": model.get_n_leaves(),\n",
|
||
" \"class_weight\": \"balanced\",\n",
|
||
" \"n_features\": int(X_fit.shape[1]),\n",
|
||
" \"label_mapping\": label_mapping,\n",
|
||
" \"test_accuracy\": float(acc),\n",
|
||
" \"train_samples\": int(len(X_fit)),\n",
|
||
" \"test_samples\": int(len(X_test_np)),\n",
|
||
" \"saved_at\": datetime.now().isoformat(),\n",
|
||
"}\n",
|
||
"info_path = \"model_decision_tree_land_use_info.json\"\n",
|
||
"with open(info_path, \"w\") as f:\n",
|
||
" json.dump(info, f, indent=2, ensure_ascii=False)\n",
|
||
"print(f\"✅ Info saved → {info_path}\")\n",
|
||
"print(json.dumps(info, indent=2, ensure_ascii=False))\n",
|
||
"\n",
|
||
"# ── Đóng kết nối Dask ──────────────────────────────────────────────────────────\n",
|
||
"try:\n",
|
||
" client.close()\n",
|
||
" cluster.close()\n",
|
||
" print(\"✅ Dask cluster closed.\")\n",
|
||
"except Exception:\n",
|
||
" pass\n"
|
||
]
|
||
}
|
||
],
|
||
"metadata": {
|
||
"kernelspec": {
|
||
"display_name": "Python 3 (ipykernel)",
|
||
"language": "python",
|
||
"name": "python3"
|
||
},
|
||
"language_info": {
|
||
"codemirror_mode": {
|
||
"name": "ipython",
|
||
"version": 3
|
||
},
|
||
"file_extension": ".py",
|
||
"mimetype": "text/x-python",
|
||
"name": "python",
|
||
"nbconvert_exporter": "python",
|
||
"pygments_lexer": "ipython3",
|
||
"version": "3.12.3"
|
||
}
|
||
},
|
||
"nbformat": 4,
|
||
"nbformat_minor": 5
|
||
}
|